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BioLiP
>rna
aauccaugaccaaagaaucgucacaaaucgaagcuuacaaaauggaguaaaauuuuguuuacucaguaauaugcuuuggg
uugaaagucucccaccaauucguaugcggaaaacguaaugagauuuaaaaauaauuguuuaaaucaacucauuaaggagg
augcccuuggguauucugcuucuugaccugguaccucuauugcaggguacugguguuuucuucgguacuggauuccguuu
guauggaaucuaaaccauaguuaugacgauugcucuuucccgugcuggaucgaguaacccaauggagcuuacuauucuug
guccauggauu

The query sequence (length=331) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7c79:A 331 331 1.0000 1.0000 1.0000 4.25e-176
2 7c7a:A 330 331 0.9970 1.0000 0.9970 7.11e-174
3 6w6v:A 294 330 0.8882 1.0000 0.8909 1.69e-105

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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