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BioLiP
>rna
aauacagagaucagcaguuccccugcauaaggaugaaccguguuu

The query sequence (length=45) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jcm:D 45 45 1.0000 1.0000 1.0000 3.61e-18
2 5gan:W 80 46 1.0000 0.5625 0.9783 1.68e-16
3 5nrl:6 95 41 0.9111 0.4316 1.0000 6.04e-16
4 5gap:W 56 41 0.9111 0.7321 1.0000 6.04e-16
5 5zwm:F 99 41 0.8889 0.4040 0.9756 1.01e-13 5zwo:F
6 5y88:D 101 48 0.9778 0.4356 0.9167 4.70e-12
7 5tf6:B 71 48 0.9778 0.6197 0.9167 4.70e-12
8 5mps:6 99 48 0.9778 0.4444 0.9167 4.70e-12 5mq0:6
9 5lj3:V 97 48 0.9778 0.4536 0.9167 4.70e-12 5lj5:V
10 7dco:F 103 48 0.9778 0.4272 0.9167 4.70e-12 5gm6:E, 5gmk:E, 6j6g:E, 6j6h:E, 6j6n:E, 6j6q:E, 5wsg:E, 5ylz:D
11 7b9v:6 102 48 0.9778 0.4314 0.9167 4.70e-12 6bk8:6, 6exn:6, 5lqw:6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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