BioLiP

>rna
aagcaguugaagacaaguucgaggcuugucguucguuauguuuugucaaacgguggagagagucgcuaggugaucgucag
aucugccuagucucuauacagcguguuuaauugacuggguugaugcguauugagagauacaauuugggaagaaauuccca
gaguguguuucuuuugcguuuaaccugaacagucucaucgugggcauauuccauuggugagcagcgaaggauuuggugga
uugggggaaugccuuguugaauagccggucgcaagacugugauucuucaaguguaaccuccucucaaaucagcgauauca
aacguaccaccgggguaucuguuugguggaaccugauuagaggaaacucaaagagugccggagugcgcuggucaagagug
uaaaagcuuuuugaacagagagcauuuggcagcagagagaccugaucuggaauuucagcugu

The query sequence (length=462) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	5wyj:5A	462	462	1.0000	1.0000	1.0000	0.0	5wyk:5A
2	7suk:L0	488	467	0.8636	0.8176	0.8544	1.09e-123	5wlc:L0
3	7d5s:5A	523	253	0.5087	0.4493	0.9289	4.05e-98	6lqp:5A, 6lqu:5A
4	7d5s:5A	523	223	0.4286	0.3786	0.8879	5.46e-67	6lqp:5A, 6lqu:5A
5	6zqb:D2	522	253	0.5065	0.4483	0.9249	1.88e-96
6	6zqb:D2	522	222	0.4286	0.3793	0.8919	1.17e-68
7	6zqa:D2	523	253	0.5065	0.4474	0.9249	1.88e-96
8	6zqa:D2	523	222	0.4286	0.3786	0.8919	1.17e-68
9	6ke6:5A	522	253	0.5065	0.4483	0.9249	1.88e-96
10	6ke6:5A	522	223	0.4286	0.3793	0.8879	5.46e-67
11	7ajt:D2	446	253	0.5065	0.5247	0.9249	1.88e-96	6zqc:D2
12	7ajt:D2	446	147	0.2987	0.3094	0.9388	7.16e-56	6zqc:D2
13	6nd4:0	408	222	0.4048	0.4583	0.8423	1.21e-48
14	6nd4:0	408	92	0.1840	0.2083	0.9239	9.60e-30
15	6nd4:0	408	36	0.0758	0.0858	0.9722	9.87e-10
16	6lqq:5A	375	202	0.3680	0.4533	0.8416	9.40e-45
17	6lqq:5A	375	62	0.1190	0.1467	0.8871	1.64e-12
18	7d63:5A	192	66	0.1364	0.3281	0.9545	4.50e-23	6lqr:5A

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