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BioLiP
>rna
aagcagcuuuacagaucaauggcggagggaggucaacaucaagaacugugggccuuuuauugccuauagaacuuauaacg
aacaugguucuugccuuuuaccagaaccauccggguguugucuccauagaaacagguaaagcuguccguuacugugggcu
ugccauauuuuuuggaac

The query sequence (length=178) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b9v:5 178 178 1.0000 1.0000 1.0000 2.45e-91
2 7dco:B 179 178 0.9775 0.9721 0.9775 1.48e-83 6j6g:D, 6j6h:D, 6j6n:D, 6j6q:D
3 6exn:5 171 172 0.9494 0.9883 0.9826 6.90e-82
4 5zwm:B 175 178 0.9551 0.9714 0.9551 8.99e-76 5zwo:B
5 5nrl:5 170 178 0.9551 1.0000 0.9551 8.99e-76
6 5gam:U 141 142 0.7528 0.9504 0.9437 9.25e-56 5gan:U, 5lj3:U, 5lj5:U, 5lqw:5, 5mps:5, 5mq0:5
7 6bk8:5 103 101 0.5449 0.9417 0.9604 9.45e-41
8 5gm6:D 117 100 0.5393 0.8205 0.9600 3.40e-40 5gmk:D, 5wsg:D, 5y88:B, 5ylz:B
9 3jcm:F 113 100 0.5169 0.8142 0.9200 2.06e-32

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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