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BioLiP
>rna
aacgugucgcgauggaugacuuggcuuccuauuucguugaagaacgcaguaaagugcgauaagugguaucaauugcagac
auucaauuaccgaaucuuugaacgcaaacggcgcaugggagaagcucgugucauccccgugcaugccauauucucagugu
cga

The query sequence (length=163) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8a3w:7 163 163 1.0000 1.0000 1.0000 4.83e-83
2 8ovj:7 164 164 1.0000 0.9939 0.9939 2.25e-81
3 8rxh:L7 166 165 1.0000 0.9819 0.9879 2.91e-80 8rxx:L7
4 6az3:7 163 165 0.9877 0.9877 0.9758 2.26e-76
5 8a98:7 160 163 0.9755 0.9938 0.9755 2.93e-75
6 5t2a:C 162 164 0.9448 0.9506 0.9390 8.25e-66
7 8ove:BC 160 163 0.9387 0.9563 0.9387 2.97e-65
8 3jcs:7 154 163 0.9448 1.0000 0.9448 2.97e-65
9 8ova:BC 160 164 0.9325 0.9500 0.9268 6.42e-62
10 4v8m:BC 169 169 0.9448 0.9112 0.9112 3.87e-59
11 5t5h:C 147 163 0.8896 0.9864 0.8896 5.07e-48

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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