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BioLiP
>rna
aacgugucgcgauggaugacuuggcuuccuauucguugaagaacgcaguaaagugcgauaagugguaucaauugcagaaa
uuaccaaucuuugaacgcaaacggcgcaugggagaagcuugucauccccgugcaugccauauucucagugucga

The query sequence (length=154) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jcs:7 154 154 1.0000 1.0000 1.0000 4.56e-78
2 8a98:7 160 160 0.9935 0.9563 0.9563 4.62e-68
3 8a3w:7 163 163 1.0000 0.9448 0.9448 2.78e-65
4 8ovj:7 164 164 1.0000 0.9390 0.9390 3.60e-64
5 8rxh:L7 166 165 1.0000 0.9277 0.9333 1.67e-62 8rxx:L7
6 8ova:BC 160 159 0.9675 0.9313 0.9371 1.67e-62
7 8ove:BC 160 160 0.9610 0.9250 0.9250 3.62e-59
8 6az3:7 163 165 0.9870 0.9325 0.9212 1.30e-58
9 5t2a:C 162 163 0.9610 0.9136 0.9080 1.01e-54
10 5t5h:C 147 156 0.9286 0.9728 0.9167 3.65e-54
11 4v8m:BC 169 169 0.9740 0.8876 0.8876 2.84e-50

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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