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BioLiP
>rna
aacagcauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaaguggcaccgagucggugcuu

The query sequence (length=69) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7v59:C 115 69 1.0000 0.6000 1.0000 3.04e-31 7v59:G
2 8fzt:B 69 69 1.0000 1.0000 1.0000 3.04e-31
3 5f9r:A 116 69 1.0000 0.5948 1.0000 3.04e-31 6mcb:B, 6mcc:B, 5vzl:B
4 7z4g:A 91 63 0.9130 0.6923 1.0000 6.57e-28
5 8ye9:C 90 63 0.9130 0.7000 1.0000 6.57e-28
6 8ye6:C 92 63 0.9130 0.6848 1.0000 6.57e-28 7z4h:A
7 8t78:B 89 63 0.9130 0.7079 1.0000 6.57e-28
8 8t77:B 89 63 0.9130 0.7079 1.0000 6.57e-28 8t79:B
9 8t6y:B 88 63 0.9130 0.7159 1.0000 6.57e-28
10 8t6t:B 95 63 0.9130 0.6632 1.0000 6.57e-28
11 8t6s:B 90 63 0.9130 0.7000 1.0000 6.57e-28 7z4c:A
12 8t6p:B 88 63 0.9130 0.7159 1.0000 6.57e-28 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
13 7s4v:B 98 63 0.9130 0.6429 1.0000 6.57e-28 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
14 7s4u:B 97 63 0.9130 0.6495 1.0000 6.57e-28
15 6o0z:B 96 63 0.9130 0.6562 1.0000 6.57e-28 8t6x:B, 7z4i:A, 7z4l:A
16 6o0x:B 98 63 0.9130 0.6429 1.0000 6.57e-28 6o0y:B
17 6ifo:D 90 63 0.9130 0.7000 1.0000 6.57e-28
18 6ifo:C 88 63 0.9130 0.7159 1.0000 6.57e-28 5xbl:B
19 8g1i:B 98 63 0.9130 0.6429 1.0000 6.57e-28
20 8ygj:B 136 62 0.8986 0.4559 1.0000 2.36e-27
21 5y36:B 99 62 0.8986 0.6263 1.0000 2.36e-27
22 8wus:B 115 62 0.8986 0.5391 1.0000 2.36e-27
23 7s38:R 87 62 0.8986 0.7126 1.0000 2.36e-27
24 7s36:R 87 62 0.8986 0.7126 1.0000 2.36e-27 8t6o:B
25 4oo8:B 97 62 0.8986 0.6392 1.0000 2.36e-27 4oo8:E
26 8kal:E 95 62 0.8986 0.6526 1.0000 2.36e-27
27 8kak:A 94 62 0.8986 0.6596 1.0000 2.36e-27 8kak:E, 8kal:A, 8kam:A
28 8kah:I 63 62 0.8986 0.9841 1.0000 2.36e-27 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J
29 8kag:A 98 62 0.8986 0.6327 1.0000 2.36e-27
30 6aeb:A 95 62 0.8986 0.6526 1.0000 2.36e-27 6aeb:E, 6aeg:A
31 8wuv:B 126 61 0.8841 0.4841 1.0000 8.50e-27
32 8wuu:B 111 61 0.8841 0.5495 1.0000 8.50e-27
33 8wut:B 112 61 0.8841 0.5446 1.0000 8.50e-27
34 4zt0:B 72 46 0.6667 0.6389 1.0000 1.85e-18 4zt0:D, 4zt9:B, 4zt9:D
35 7zo1:A 85 46 0.6667 0.5412 1.0000 1.85e-18
36 7z4d:F 77 46 0.6667 0.5974 1.0000 1.85e-18
37 7z4d:A 75 46 0.6667 0.6133 1.0000 1.85e-18
38 5vw1:C 73 46 0.6667 0.6301 1.0000 1.85e-18
39 6vpc:A 81 46 0.6667 0.5679 1.0000 1.85e-18
40 4un4:A 82 46 0.6667 0.5610 1.0000 1.85e-18 4un5:A
41 7qr8:A 85 46 0.6667 0.5412 1.0000 1.85e-18
42 7qr1:A 83 46 0.6667 0.5542 1.0000 1.85e-18
43 7qr0:A 82 46 0.6667 0.5610 1.0000 1.85e-18
44 7qqw:A 81 46 0.6667 0.5679 1.0000 1.85e-18
45 7qqv:A 85 46 0.6667 0.5412 1.0000 1.85e-18
46 7qqs:A 84 46 0.6667 0.5476 1.0000 1.85e-18 7qqt:A, 7qqu:A, 7qqx:A, 7qqz:A, 7qr5:A
47 7qqq:A 83 46 0.6667 0.5542 1.0000 1.85e-18
48 7qqp:A 84 46 0.6667 0.5476 1.0000 1.85e-18 7qqr:A
49 7oxa:A 81 46 0.6667 0.5679 1.0000 1.85e-18
50 7ox9:A 84 46 0.6667 0.5476 1.0000 1.85e-18 7qqo:A, 7qr7:A
51 7ox8:A 84 46 0.6667 0.5476 1.0000 1.85e-18
52 7ox7:A 81 46 0.6667 0.5679 1.0000 1.85e-18
53 6k4s:A 80 46 0.6667 0.5750 1.0000 1.85e-18 6k4u:A
54 6k4p:A 82 46 0.6667 0.5610 1.0000 1.85e-18
55 5fw1:A 81 46 0.6667 0.5679 1.0000 1.85e-18 5fw2:A, 5fw3:A, 6k3z:A, 6k4q:A, 6k57:A, 4un3:A
56 5fq5:A 83 46 0.6667 0.5542 1.0000 1.85e-18
57 6ai6:B 81 46 0.6667 0.5679 1.0000 1.85e-18 5b2r:A, 5b2s:A, 5b2t:A
58 7s37:R 46 31 0.4493 0.6739 1.0000 4.04e-10
59 7s3h:R 30 30 0.4348 1.0000 1.0000 1.45e-09

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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