>rna
aaagguuugguccuggccuuauaauuaauuagagguaaaauuacacaugcaaaccuccauagaccgguguaaaaucccuu
aaacauuuacuuaaaauuuaaggagaggguaucaagcacauuaaaauagcuuaagacaccuugccuagccacacccccac
gggacucagcagugauaaauauuaagcaauaaacgaaaguuugacuaaguuauaccucuuaggguugguaaauuucgugc
cagccaccgcggucauacgauuaacccaaacuaauuaucuucggcguaaaacgugucaacuauaaauaaauaaauagaau
uaaaauccaacuuauaugugaaaauucauuguuaggaccuaaacucaauaacgaaaguaauucuagucauuuauaauaca
cgacagcuaagacccaaacugggauuagauaccccacuaugcuuagccauaaaccuaaauaauuaauuaacaaaacuauu
ugccagagaacuacuagccauagcuuaaaacucaaaggacuuggcgguacuuuauauccaucuagaggagccuguucuau
aaucgauaaaccccgcucuaccucaccaucucuugcuaauucagccuauauaccgccaucuucagcaaacccuaaaaagg
uauuaaaguaagcaaaagaaucaaacauaaaaacguuaggucaagguguagccaaugaaaugggaagaaaugggcuacau
uuucuuauaaaagaacauuacuauacccuuuaugaaacuaaaggacuaaggaggauuuaguaguaaauuaagaauagaga
gcuuaauugaauugagcaaugaaguacgcacacaccgcccgucacccuccucaaauuaaauuaaacuuaacauaauuaau
uucuagacauccguuuaugagaggagauaagucguaacaagguaagcauacuggaaagugugcuuggaauaauc

The query sequence (length=954) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	7pnw:A	954	954	1.0000	1.0000	1.0000	0.0
2	7pnv:A	951	951	0.9969	1.0000	1.0000	0.0
3	7pnu:A	941	952	0.9843	0.9979	0.9863	0.0
4	7pnt:A	909	835	0.8732	0.9164	0.9976	0.0
5	7pnt:A	909	29	0.0304	0.0319	1.0000	9.69e-08
6	5aj3:A	960	968	0.8113	0.8063	0.7996	0.0	5aj4:AA, 6gaw:AA, 6gaz:AA, 7nqh:AA, 7nql:AA, 7nsi:AA, 7nsj:AA, 8oin:AA, 8oip:AA, 6ydp:AA, 6ydw:AA
7	3jd5:A	952	841	0.7191	0.7206	0.8157	0.0	6neq:A, 6nf8:A
8	6zs9:AA	927	823	0.6782	0.6980	0.7861	2.88e-142
9	7l08:AA	944	827	0.6803	0.6875	0.7848	2.88e-142	6vlz:AA, 6vmi:AA
10	7pnx:A	951	828	0.6792	0.6814	0.7826	3.73e-141	7pny:A, 7pnz:A, 7po0:A, 8qrl:A
11	8oir:AA	955	828	0.6792	0.6785	0.7826	3.73e-141	8ois:AA, 7p2e:A, 7po1:A, 7po2:A, 7po3:A, 8qrk:A, 8qrm:A, 8qrn:A, 6rw4:A, 6rw5:A
12	7og4:AA	924	821	0.6761	0.6981	0.7856	3.73e-141	6zsa:AA, 6zsb:AA, 6zsc:AA, 6zsd:AA, 6zse:AA, 6zsg:AA
13	8any:AA	954	828	0.6792	0.6792	0.7826	3.73e-141	7qi4:AA, 7qi5:AA, 7qi6:AA, 6zm5:AA, 6zm6:AA
14	7a5f:A6	928	823	0.6771	0.6961	0.7849	1.34e-140	7a5g:A6, 7a5i:A6, 7a5k:A6, 8k2a:S1, 8xt0:S1, 8xt2:S1
15	3j9m:AA	923	821	0.6751	0.6977	0.7844	1.73e-139	6nu2:AA, 6nu3:AA
16	8cst:A	888	490	0.4109	0.4414	0.8000	2.39e-93
17	8css:A	846	490	0.4099	0.4622	0.7980	8.59e-93
18	8csr:A	853	490	0.4099	0.4584	0.7980	8.59e-93
19	8csu:A	881	436	0.3616	0.3916	0.7913	4.08e-76
20	8csq:A	802	228	0.2034	0.2419	0.8509	9.03e-58
21	8csp:A	737	228	0.2034	0.2632	0.8509	9.03e-58

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