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BioLiP
>rna
aaagaugagacgcguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaaguga

The query sequence (length=75) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7z4d:F 77 75 1.0000 0.9740 1.0000 1.57e-34
2 7z4d:A 75 75 1.0000 1.0000 1.0000 1.57e-34
3 7z4g:A 91 74 0.9867 0.8132 1.0000 5.65e-34
4 8ye6:C 92 74 0.9867 0.8043 1.0000 5.65e-34 7z4h:A
5 8t6t:B 95 74 0.9867 0.7789 1.0000 5.65e-34
6 7s4v:B 98 74 0.9867 0.7551 1.0000 5.65e-34 7s4x:B, 8spq:B, 8sqh:B, 8srs:B, 8t7s:B, 8tzz:B, 8u3y:B, 7z4j:A
7 7s4u:B 97 74 0.9867 0.7629 1.0000 5.65e-34
8 6o0z:B 96 74 0.9867 0.7708 1.0000 5.65e-34 8t6x:B, 7z4i:A, 7z4l:A
9 6o0x:B 98 74 0.9867 0.7551 1.0000 5.65e-34 6o0y:B
10 8t6s:B 90 73 0.9733 0.8111 1.0000 2.03e-33 7z4c:A
11 4zt0:B 72 71 0.9467 0.9861 1.0000 2.63e-32 4zt0:D, 4zt9:B, 4zt9:D
12 8t6p:B 88 71 0.9467 0.8068 1.0000 2.63e-32 8t76:B, 8t7s:H, 7z4e:A, 7z4k:A
13 8ye9:C 90 74 0.9600 0.8000 0.9730 4.40e-30
14 8t78:B 89 67 0.8933 0.7528 1.0000 4.40e-30
15 8t77:B 89 65 0.8667 0.7303 1.0000 5.69e-29 8t79:B
16 8t6y:B 88 65 0.8667 0.7386 1.0000 5.69e-29
17 7qr8:A 85 63 0.8400 0.7412 1.0000 7.36e-28
18 7qqw:A 81 63 0.8400 0.7778 1.0000 7.36e-28
19 7qqv:A 85 63 0.8400 0.7412 1.0000 7.36e-28
20 7qqs:A 84 63 0.8400 0.7500 1.0000 7.36e-28 7qqt:A, 7qqu:A, 7qqx:A, 7qqz:A, 7qr5:A
21 4oo8:B 97 63 0.8400 0.6495 1.0000 7.36e-28 4oo8:E
22 6ifo:D 90 63 0.8400 0.7000 1.0000 7.36e-28
23 6ifo:C 88 63 0.8400 0.7159 1.0000 7.36e-28 5xbl:B
24 6ai6:B 81 63 0.8400 0.7778 1.0000 7.36e-28 5b2r:A, 5b2s:A, 5b2t:A
25 7zo1:A 85 62 0.8267 0.7294 1.0000 2.65e-27
26 7qr1:A 83 62 0.8267 0.7470 1.0000 2.65e-27
27 7qr0:A 82 62 0.8267 0.7561 1.0000 2.65e-27
28 7qqq:A 83 62 0.8267 0.7470 1.0000 2.65e-27
29 7ox9:A 84 62 0.8267 0.7381 1.0000 2.65e-27 7qqo:A, 7qr7:A
30 7ox8:A 84 62 0.8267 0.7381 1.0000 2.65e-27
31 5fq5:A 83 62 0.8267 0.7470 1.0000 2.65e-27
32 8ygj:B 136 61 0.8133 0.4485 1.0000 9.52e-27
33 5y36:B 99 61 0.8133 0.6162 1.0000 9.52e-27
34 8wuv:B 126 61 0.8133 0.4841 1.0000 9.52e-27
35 8wuu:B 111 61 0.8133 0.5495 1.0000 9.52e-27
36 8wut:B 112 61 0.8133 0.5446 1.0000 9.52e-27
37 8wus:B 115 61 0.8133 0.5304 1.0000 9.52e-27
38 5vw1:C 73 61 0.8133 0.8356 1.0000 9.52e-27
39 6vpc:A 81 68 0.8800 0.8148 0.9706 9.52e-27
40 4un4:A 82 61 0.8133 0.7439 1.0000 9.52e-27 4un5:A
41 7s38:R 87 61 0.8133 0.7011 1.0000 9.52e-27
42 7s36:R 87 61 0.8133 0.7011 1.0000 9.52e-27 8t6o:B
43 7qqp:A 84 61 0.8133 0.7262 1.0000 9.52e-27 7qqr:A
44 7oxa:A 81 61 0.8133 0.7531 1.0000 9.52e-27
45 7ox7:A 81 61 0.8133 0.7531 1.0000 9.52e-27
46 8kal:E 95 61 0.8133 0.6421 1.0000 9.52e-27
47 8kak:A 94 61 0.8133 0.6489 1.0000 9.52e-27 8kak:E, 8kal:A, 8kam:A
48 8kag:A 98 61 0.8133 0.6224 1.0000 9.52e-27
49 6k4s:A 80 61 0.8133 0.7625 1.0000 9.52e-27 6k4u:A
50 6k4p:A 82 61 0.8133 0.7439 1.0000 9.52e-27
51 8g1i:B 98 61 0.8133 0.6224 1.0000 9.52e-27
52 5fw1:A 81 61 0.8133 0.7531 1.0000 9.52e-27 5fw2:A, 5fw3:A, 6k3z:A, 6k4q:A, 6k57:A, 4un3:A
53 6aeb:A 95 61 0.8133 0.6421 1.0000 9.52e-27 6aeb:E, 6aeg:A
54 7v59:C 115 46 0.6133 0.4000 1.0000 2.08e-18 7v59:G
55 8fzt:B 69 46 0.6133 0.6667 1.0000 2.08e-18
56 5f9r:A 116 46 0.6133 0.3966 1.0000 2.08e-18 6mcb:B, 6mcc:B, 5vzl:B
57 8kah:I 63 45 0.6000 0.7143 1.0000 7.47e-18 8kah:J, 8kai:I, 8kai:J, 8kaj:I, 8kaj:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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