Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>rna
aaacuuucagcaacggaucucuuggcucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugaauca
ucgaaucuuugaacgcacugcgccuuaaggcaugccuguuugagugucau

The query sequence (length=130) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8euy:2 130 130 1.0000 1.0000 1.0000 8.21e-65
2 8eth:2 130 132 0.9846 0.9846 0.9697 3.85e-58
3 8eup:2 146 144 1.0000 0.8904 0.9028 2.35e-45
4 8etg:2 146 109 0.8077 0.7192 0.9633 2.35e-45
5 8etj:2 144 144 0.9923 0.8958 0.8958 3.93e-43
6 8esq:2 150 112 0.8154 0.7067 0.9464 3.93e-43 8esr:2, 8ev3:2
7 8etc:2 147 146 1.0000 0.8844 0.8904 1.41e-42
8 8eug:2 151 114 0.8154 0.7020 0.9298 2.37e-40
9 8eti:2 152 115 0.8154 0.6974 0.9217 1.10e-38
10 8eui:2 158 75 0.5769 0.4747 1.0000 3.08e-34
11 8pv8:C2 150 112 0.7692 0.6667 0.8929 1.43e-32
12 7ohs:2 147 146 0.9538 0.8435 0.8493 5.16e-32
13 6ylg:2 154 115 0.7846 0.6623 0.8870 1.85e-31 6ylh:2
14 8v83:2 150 75 0.5615 0.4867 0.9733 6.67e-31 8v84:2
15 7ohy:2 148 75 0.5615 0.4932 0.9733 6.67e-31
16 7ohx:2 148 75 0.5615 0.4932 0.9733 6.67e-31
17 7ohw:2 149 148 0.9615 0.8389 0.8446 6.67e-31
18 7ohv:2 155 75 0.5615 0.4710 0.9733 6.67e-31 8v87:2
19 7ohu:2 148 75 0.5615 0.4932 0.9733 6.67e-31
20 7ohp:2 149 147 0.9538 0.8322 0.8435 6.67e-31
21 7oh3:2 155 75 0.5615 0.4710 0.9733 6.67e-31
22 5obm:4 156 75 0.5615 0.4679 0.9733 6.67e-31
23 8hfr:3n 156 75 0.5615 0.4679 0.9733 6.67e-31 6qik:y, 6qt0:y, 6qtz:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B
24 6ft6:2 162 75 0.5615 0.4506 0.9733 6.67e-31
25 6em3:2 157 75 0.5615 0.4650 0.9733 6.67e-31 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3
26 8aaf:i 158 75 0.5615 0.4620 0.9733 6.67e-31 8agt:i, 8agu:i, 8agv:i, 8agw:i, 8agx:i, 8agz:i, 5apn:8, 5apo:8, 7azy:G, 7b7d:LC, 8bip:C3, 8bjq:C3, 8bn3:4, 8bqd:BS, 8bqx:BS, 7bt6:2, 7btb:2, 6c0f:2, 6cb1:2, 8ccs:CC, 8cdl:CC, 8cdr:CC, 8ceh:CC, 8cf5:CC, 8cg8:CC, 8cgn:CC, 8civ:CC, 8cku:CC, 8cmj:CC, 5dat:4, 5dat:8, 5dc3:4, 5dc3:8, 5dge:4, 5dge:8, 5dgf:4, 5dgf:8, 5dgv:4, 5dgv:8, 6elz:2, 6em1:2, 6em4:2, 6em5:2, 8eub:A4, 8evp:A4, 8evq:A4, 8evr:A4, 8evs:A4, 8evt:A4, 8ewb:A4, 8ewc:A4, 5fci:4, 5fci:8, 5fcj:4, 5fcj:8, 5gak:4, 6gq1:4, 6gqb:4, 6gqv:4, 5h4p:4, 6hd7:4, 6hhq:4, 6hhq:AT, 5i4l:4, 5i4l:8, 3j6x:8S, 3j6y:8S, 3j77:8S, 3j78:8S, 3jct:2, 5jcs:y, 5juo:C, 5jup:C, 5jus:C, 5jut:C, 5juu:C, 8k82:C3, 5lyb:4, 5lyb:8, 5m1j:44, 6m62:2, 5mc6:BS, 5mei:4, 5mei:AT, 7mpi:A4, 7mpj:A4, 6n8j:3, 6n8m:C, 6n8n:C, 6n8o:C, 7n8b:A4, 7nac:2, 5ndg:4, 5ndv:8, 5ndw:4, 5ndw:8, 7nrc:LC, 7nrd:LC, 5obm:8, 7of1:2, 7ohq:2, 7ohr:2, 6oig:8, 5on6:4, 5on6:AT, 7osa:58S, 7osm:58S, 8p8m:LD, 8p8u:LD, 8pfr:LD, 6q8y:BS, 7r7a:2, 6r84:4, 6r86:4, 6r87:4, 7rr5:C3, 6s47:AC, 6snt:3, 6t4q:C3, 5t62:C, 5t6r:C, 6t7i:C3, 6t7t:C3, 6t83:3b, 5tbw:4, 5tbw:AT, 6tb3:BS, 5tga:4, 5tga:8, 5tgm:4, 5tgm:8, 6tnu:BS, 7too:A58S, 7top:A58S, 7u0h:2, 4u3m:4, 4u3m:8, 4u3n:4, 4u3n:8, 4u3u:4, 4u3u:8, 4u4n:4, 4u4n:8, 4u4o:4, 4u4o:8, 4u4q:4, 4u4q:8, 4u4r:4, 4u4r:8, 4u4u:4, 4u4u:8, 4u4y:4, 4u4y:8, 4u4z:4, 4u4z:8, 4u50:4, 4u50:8, 4u51:4, 4u51:8, 4u52:4, 4u52:8, 4u53:4, 4u53:8, 4u55:4, 4u55:8, 4u56:4, 4u56:8, 4u6f:4, 4u6f:8, 7ug6:2, 7uoo:2, 7uqb:2, 7uqz:2, 7v08:2, 4v7r:B3, 4v7r:D3, 4v88:A4, 4v88:A8, 4v8t:8, 4v8y:B8, 4v8z:B8, 4v91:4, 6xiq:4, 6xir:4, 8y0u:C3, 6ylx:2, 6yly:3, 7zpq:3, 7zrs:3, 7zs5:4, 7zuw:3, 7zux:3, 7zw0:LD
27 4v6i:DB 157 74 0.5538 0.4586 0.9730 2.40e-30
28 8pv5:C2 152 114 0.7692 0.6579 0.8772 8.63e-30
29 8c3a:AU 158 75 0.5538 0.4557 0.9600 3.10e-29 8cq7:AU, 8cre:AU, 8oeq:AU, 7pzy:4, 7q08:4, 7q0f:4, 7q0p:4, 7q0r:4, 8q5i:4
30 8c3a:4 157 75 0.5538 0.4586 0.9600 3.10e-29 8cq7:4, 8cqw:4, 8cqw:AU, 8cre:4, 8oeq:4
31 8pv2:C2 153 115 0.7692 0.6536 0.8696 4.01e-28
32 4v7h:B4 157 69 0.5154 0.4268 0.9710 1.44e-27
33 7r81:C1 158 75 0.5462 0.4494 0.9467 1.44e-27
34 7olc:4 156 75 0.5462 0.4551 0.9467 1.44e-27 7old:4, 8oo0:4, 8pv1:C2, 8pv3:C2, 8pv4:C2, 8pv6:C2, 8pv7:C2, 8pvk:C2, 8pvl:C2, 7z3n:4, 7z3o:4
35 8i9t:C2 158 75 0.5462 0.4494 0.9467 1.44e-27 8i9v:C2
36 8i9r:C2 228 75 0.5462 0.3114 0.9467 1.44e-27
37 8i9p:C2 256 75 0.5462 0.2773 0.9467 1.44e-27 8i9w:C2, 8i9x:C2, 8i9y:C2, 8i9z:C2, 8ia0:C2
38 8e5t:2 138 52 0.3923 0.3696 0.9808 8.75e-20
39 2ww9:D 63 35 0.2692 0.5556 1.0000 5.30e-12 2wwa:D, 2wwb:D
40 4v8p:B2 154 41 0.3000 0.2532 0.9512 5.30e-12 4v8p:C2, 4v8p:E2, 4v8p:G2

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218