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BioLiP
>rna
aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagcgaaaugcgauacguaaugugaauugcagaa
uuccgugaaucaucgaaucuuugaacgcacauugcgccccuugguauuccagggggcaugccuguuugagcgucauu

The query sequence (length=157) is searched through a non-redundant set of database sequences rna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6em3:2 157 157 1.0000 1.0000 1.0000 1.00e-79 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:BS, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3
2 8aaf:i 158 157 1.0000 0.9937 1.0000 1.00e-79 8agt:i, 8agu:i, 8agv:i, 8agw:i, 8agx:i, 8agz:i, 5apn:8, 5apo:8, 7azy:G, 7b7d:LC, 8bip:C3, 8bjq:C3, 8bn3:4, 8bqd:BS, 8bqx:BS, 7bt6:2, 7btb:2, 6c0f:2, 6cb1:2, 8ccs:CC, 8cdl:CC, 8cdr:CC, 8ceh:CC, 8cf5:CC, 8cg8:CC, 8cgn:CC, 8civ:CC, 8cku:CC, 8cmj:CC, 5dat:4, 5dat:8, 5dc3:4, 5dc3:8, 5dge:4, 5dge:8, 5dgf:4, 5dgf:8, 5dgv:4, 5dgv:8, 6elz:2, 6em1:2, 6em4:2, 6em5:2, 8eub:A4, 8evp:A4, 8evq:A4, 8evr:A4, 8evs:A4, 8evt:A4, 8ewb:A4, 8ewc:A4, 5fci:4, 5fci:8, 5fcj:4, 5fcj:8, 5gak:4, 6gq1:4, 6gqb:4, 6gqv:4, 5h4p:4, 6hd7:4, 6hhq:4, 6hhq:AT, 5i4l:4, 5i4l:8, 3j6x:8S, 3j6y:8S, 3j77:8S, 3j78:8S, 3jct:2, 5jcs:y, 5juo:C, 5jup:C, 5jus:C, 5jut:C, 5juu:C, 8k82:C3, 5lyb:4, 5lyb:8, 5m1j:44, 6m62:2, 5mc6:BS, 5mei:4, 5mei:AT, 7mpi:A4, 7mpj:A4, 6n8j:3, 6n8m:C, 6n8n:C, 6n8o:C, 7n8b:A4, 7nac:2, 5ndg:4, 5ndv:8, 5ndw:4, 5ndw:8, 7nrc:LC, 7nrd:LC, 5obm:8, 7of1:2, 7ohq:2, 7ohr:2, 6oig:8, 5on6:4, 5on6:AT, 7osa:58S, 7osm:58S, 8p8m:LD, 8p8u:LD, 8pfr:LD, 6q8y:BS, 7r7a:2, 6r84:4, 6r86:4, 6r87:4, 7rr5:C3, 6s47:AC, 6snt:3, 6t4q:C3, 5t62:C, 5t6r:C, 6t7i:C3, 6t7t:C3, 6t83:3b, 5tbw:4, 5tbw:AT, 6tb3:BS, 5tga:4, 5tga:8, 5tgm:4, 5tgm:8, 6tnu:BS, 7too:A58S, 7top:A58S, 7u0h:2, 4u3m:4, 4u3m:8, 4u3n:4, 4u3n:8, 4u3u:4, 4u3u:8, 4u4n:4, 4u4n:8, 4u4o:4, 4u4o:8, 4u4q:4, 4u4q:8, 4u4r:4, 4u4r:8, 4u4u:4, 4u4u:8, 4u4y:4, 4u4y:8, 4u4z:4, 4u4z:8, 4u50:4, 4u50:8, 4u51:4, 4u51:8, 4u52:4, 4u52:8, 4u53:4, 4u53:8, 4u55:4, 4u55:8, 4u56:4, 4u56:8, 4u6f:4, 4u6f:8, 7ug6:2, 7uoo:2, 7uqb:2, 7uqz:2, 7v08:2, 4v7r:B3, 4v7r:D3, 4v88:A4, 4v88:A8, 4v8t:8, 4v8y:B8, 4v8z:B8, 4v91:4, 6xiq:4, 6xir:4, 8y0u:C3, 6ylx:2, 6yly:3, 7zpq:3, 7zrs:3, 7zs5:4, 7zuw:3, 7zux:3, 7zw0:LD
3 4v6i:DB 157 156 0.9936 0.9936 1.0000 3.60e-79
4 8hfr:3n 156 156 0.9936 1.0000 1.0000 3.60e-79 6qik:y, 6qt0:y, 6qtz:y, 6ri5:y, 6rzz:y, 6s05:y, 5z3g:B
5 6ft6:2 162 156 0.9936 0.9630 1.0000 3.60e-79
6 7oh3:2 155 157 0.9873 1.0000 0.9873 7.79e-76
7 5obm:4 156 157 0.9873 0.9936 0.9873 7.79e-76
8 6ylg:2 154 157 0.9809 1.0000 0.9809 1.30e-73 6ylh:2
9 7ohv:2 155 157 0.9809 0.9935 0.9809 1.30e-73 8v87:2
10 4v7h:B4 157 157 0.9745 0.9745 0.9745 1.69e-72
11 5it7:8 157 157 0.9490 0.9490 0.9490 2.20e-66 6uz7:8
12 8i9t:C2 158 157 0.9490 0.9430 0.9490 2.20e-66 8i9v:C2
13 8i9p:C2 256 157 0.9490 0.5820 0.9490 2.20e-66 8i9w:C2, 8i9x:C2, 8i9y:C2, 8i9z:C2, 8ia0:C2
14 8c3a:AU 158 155 0.9427 0.9367 0.9548 2.20e-66 8cq7:AU, 8cre:AU, 8oeq:AU, 7pzy:4, 7q08:4, 7q0f:4, 7q0p:4, 7q0r:4, 8q5i:4
15 8c3a:4 157 155 0.9427 0.9427 0.9548 2.20e-66 8cq7:4, 8cqw:4, 8cqw:AU, 8cre:4, 8oeq:4
16 7olc:4 156 156 0.9427 0.9487 0.9487 7.91e-66 7old:4, 8oo0:4, 8pv1:C2, 8pv3:C2, 8pv4:C2, 8pv6:C2, 8pv7:C2, 8pvk:C2, 8pvl:C2, 7z3n:4, 7z3o:4
17 8v83:2 150 157 0.9490 0.9933 0.9490 3.68e-64 8v84:2
18 7ohy:2 148 156 0.9427 1.0000 0.9487 1.32e-63
19 7ohu:2 148 156 0.9427 1.0000 0.9487 1.32e-63
20 7ohx:2 148 157 0.9427 1.0000 0.9427 6.15e-62
21 7ohw:2 149 157 0.9427 0.9933 0.9427 6.15e-62
22 7ohp:2 149 157 0.9427 0.9933 0.9427 6.15e-62
23 8pv2:C2 153 156 0.9236 0.9477 0.9295 1.03e-59
24 8eui:2 158 158 0.9299 0.9241 0.9241 1.03e-59
25 8i9r:C2 228 157 0.9236 0.6360 0.9236 1.33e-58
26 7r81:C1 158 158 0.9236 0.9177 0.9177 4.79e-58
27 8pv5:C2 152 156 0.9172 0.9474 0.9231 4.79e-58
28 7ohs:2 147 157 0.9299 0.9932 0.9299 4.79e-58
29 8pv8:C2 150 156 0.9045 0.9467 0.9103 3.73e-54
30 8eti:2 152 158 0.8981 0.9276 0.8924 1.04e-49
31 8etc:2 147 156 0.8854 0.9456 0.8910 4.86e-48
32 8eug:2 151 157 0.8854 0.9205 0.8854 1.75e-47
33 8eup:2 146 157 0.8790 0.9452 0.8790 1.05e-44
34 8esq:2 150 158 0.8790 0.9200 0.8734 3.78e-44 8esr:2, 8ev3:2
35 8etj:2 144 156 0.8662 0.9444 0.8718 6.33e-42
36 8e5t:2 138 134 0.7643 0.8696 0.8955 1.06e-39
37 8etg:2 146 158 0.8535 0.9178 0.8481 2.29e-36
38 8euy:2 130 75 0.4650 0.5615 0.9733 8.31e-31
39 8eth:2 130 75 0.4650 0.5615 0.9733 8.31e-31
40 2ww9:D 63 63 0.4013 1.0000 1.0000 1.80e-27 2wwa:D, 2wwb:D
41 7r6q:2 57 56 0.3567 0.9825 1.0000 1.40e-23
42 8onz:2 59 59 0.3694 0.9831 0.9831 1.40e-23
43 4v8p:B2 154 109 0.5796 0.5909 0.8349 1.81e-22 4v8p:C2, 4v8p:E2, 4v8p:G2
44 7nad:2 59 41 0.2611 0.6949 1.0000 3.05e-15 7r72:2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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