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BioLiP
>protein
CHLTIHTWPEYGYAAIDLFTCGEDVDPWKAFEHLKKALKAKRVHVVEHERGRYDEIGIP

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3iwc:A 59 59 1.0000 1.0000 1.0000 5.11e-40 3iwc:C, 3iwd:A, 3iwd:C
2 2iii:A 120 55 0.3729 0.1833 0.4000 6.78e-12
3 5ot1:A 572 35 0.2203 0.0227 0.3714 0.16
4 1gax:A 862 46 0.2712 0.0186 0.3478 1.7 1gax:B, 1ivs:A, 1ivs:B, 1wk9:A
5 4mmo:A 437 31 0.2203 0.0297 0.4194 1.9
6 3wdm:A 259 18 0.1864 0.0425 0.6111 2.1 4mb2:A, 4mb2:B, 4mb2:C, 4mb2:D, 3wdk:A, 3wdk:B, 3wdk:C, 3wdk:D, 3wdl:A, 3wdl:B, 3wdl:C, 3wdl:D, 3wdm:B, 3wdm:C, 3wdm:D
7 6rmg:A 1026 20 0.1695 0.0097 0.5000 2.1 6dmb:A, 6dmy:A, 7k65:A, 6mg8:A, 6n7g:A, 6n7g:B, 6n7g:D, 6n7g:E, 6n7h:A, 6n7h:B, 6n7k:A, 6n7k:B, 6n7k:D, 6n7k:E, 6rtw:A, 6rvd:A, 6rvd:B, 7v6y:A, 7v6z:A
8 5nq2:A 277 50 0.2373 0.0505 0.2800 2.6 6a6h:A, 7em9:A, 7ema:A, 7emb:A, 7emc:A, 7emc:D, 7emc:G, 7emd:A, 5h94:A, 5h94:D
9 8iu7:B 323 20 0.1695 0.0310 0.5000 2.9 8iu7:A, 8iu7:C, 8iu7:D
10 3vmm:A 471 24 0.1864 0.0234 0.4583 3.4 3wnz:A, 3wo0:A, 3wo1:A
11 5ks8:F 482 21 0.1356 0.0166 0.3810 5.0
12 5ks8:D 580 21 0.1356 0.0138 0.3810 5.0
13 5ks8:C 603 21 0.1356 0.0133 0.3810 5.0
14 6opc:B 741 33 0.1864 0.0148 0.3333 6.9 8dar:A, 8dar:B, 8dar:C, 8dar:D, 8dar:E, 8dar:F, 8das:A, 8das:B, 8das:C, 8das:D, 8das:E, 8das:F, 8dat:A, 8dat:B, 8dat:C, 8dat:D, 8dat:E, 8dat:F, 8dau:A, 8dau:B, 8dau:C, 8dau:D, 8dau:E, 8dau:F, 8dav:A, 8dav:B, 8dav:C, 8dav:D, 8dav:E, 8dav:F, 8daw:A, 8daw:B, 8daw:C, 8daw:D, 8daw:E, 8daw:F, 6oa9:A, 6oa9:B, 6oa9:C, 6oa9:E, 6oa9:F, 6oaa:B, 6oaa:C, 6oaa:D, 6oab:D, 6oab:B, 6oab:C, 6oab:A, 6omb:A, 6omb:B, 6omb:C, 6omb:D, 6omb:E, 6opc:A, 6opc:C, 6opc:D, 6opc:E
15 3wbw:A 271 35 0.2034 0.0443 0.3429 7.2 3wbw:B, 3wby:A, 3wby:B
16 5u1g:D 211 25 0.1356 0.0379 0.3200 8.3 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
17 7l1k:A 149 13 0.1017 0.0403 0.4615 8.6
18 6m24:A 274 47 0.2203 0.0474 0.2766 8.6 6m2j:A, 6m2k:A
19 8otw:A 689 34 0.2203 0.0189 0.3824 8.8
20 8pdv:A 1027 34 0.2203 0.0127 0.3824 8.9 8pd8:A, 8pd8:B, 8pd9:A, 8pdu:A, 8pdu:B
21 8xq7:A 1041 34 0.2203 0.0125 0.3824 8.9 8xq7:B
22 8otq:A 1051 34 0.2203 0.0124 0.3824 8.9 8otq:B, 8otw:B, 8xq8:A
23 3ug7:A 317 18 0.1525 0.0284 0.5000 8.9 3ug6:A, 3ug6:B, 3ug6:C, 3ug6:D, 3ug7:B, 3ug7:C, 3ug7:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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