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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
YYYSAVERNNLMRLSQSIPFVPVPPRGEPVTVYRLEESSPSILNNSMSSWSQLGLCAKIEFLSKMGGGLRRAVKVLCTWS
EHDILKSGHLYIIKSFLPEVINTWSSIYKEDTVLHLCLREIQQQRAAQKLTFAFNQMKPKSIPYSPRFLEVFLLYCHSAG
QWFAVEECMTGEFRKYNNNNGDEIIPTNTLEEIMLAFSHWTYEYTRGELLVLDLQGVGENLTDPSVIKAEEKRSCDMVFG
PANLGEDAIKNFRAKHHCNSCCRKLKLPDLKRNDYT

The query sequence (length=276) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ia9:B 280 278 1.0000 0.9857 0.9928 0.0 1ia9:A, 1iah:A, 1iah:B, 1iaj:B
2 1iaj:A 253 276 0.9058 0.9881 0.9058 0.0
3 4kuj:B 268 111 0.1522 0.1567 0.3784 1.61e-16 4kuj:A, 4nl0:A, 4nl0:B
4 4zme:A 262 190 0.2065 0.2176 0.3000 8.94e-16 5dyj:A, 5dyj:B, 5e4h:A, 5e4h:B, 5e4h:C, 5e4h:D, 5e4h:E, 5e4h:F, 5e4h:G, 5e4h:H, 5e9e:A, 5e9e:B, 3lkm:A, 3lla:A, 3lla:B, 3lmh:A, 3lmh:B, 3lmi:A, 3lmi:B, 3lmi:C, 3lmi:D, 3pdt:A, 4zme:B, 4zmf:A, 4zmf:B, 4zs4:A, 4zs4:B
5 8fny:A 497 105 0.1268 0.0704 0.3333 1.48e-11 8fny:C, 8fo6:A, 8gm5:A, 7shq:A
6 8gm4:A 462 105 0.1268 0.0758 0.3333 6.36e-11
7 7vru:B 494 188 0.1377 0.0769 0.2021 0.46 7vs4:B
8 3k5h:A 382 79 0.0833 0.0602 0.2911 1.7 3k5h:B, 3k5h:C, 3k5h:D, 3k5i:A, 3k5i:B, 3k5i:C, 3k5i:D
9 6epz:C 673 93 0.0942 0.0386 0.2796 3.7 6epy:A, 6epy:B, 6epy:C, 6epy:D, 6epz:A, 6epz:D, 6epz:B, 6eq0:A, 6eq0:B, 6eq1:A, 6eq1:B, 6eq8:D, 6eq8:B, 6eq8:C, 6eq8:A
10 3brn:A 153 70 0.0652 0.1176 0.2571 3.8 3brn:B
11 8txm:A 326 64 0.0543 0.0460 0.2344 3.9 4jtv:A, 4jtv:C, 4jtv:E, 4jtv:I, 4jtv:K, 4jtv:G, 4ju0:A, 4ju0:C, 4ju0:E, 4ju0:G, 4ju0:I, 4ju0:K, 4lvh:G, 4lvh:J, 3ube:A, 3ube:C, 3ube:E, 3ube:I, 3ube:K, 3ube:G, 3ubj:C, 3ubj:G, 3ubj:I, 3ubj:K, 3ubn:A, 3ubn:C, 3ubn:E, 3ubn:G, 3ubn:I, 3ubn:K, 3ubq:C, 3ubq:I, 3ubq:K, 6xq0:D, 6xq0:A
12 7dfl:R 275 62 0.0688 0.0691 0.3065 8.1 8x5y:B, 8x63:B, 8x64:B
13 3c3d:A 306 55 0.0616 0.0556 0.3091 8.2 3c3d:B, 3c3d:C, 3c3d:D, 3c3e:A, 3c3e:B, 3c3e:C, 3c3e:D
14 5hq4:A 662 98 0.0942 0.0393 0.2653 9.6 5hqa:A, 5hqb:A, 5hqc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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