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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YYWSRYRMPTQMPKFDNEFIDPIDDKFPMSIRGPLVRPDVPEDQYVDSWYICTSMTHHMGDYRPWSASAPPNAFRFRPFN
EFDAKGREYVQYMREFARFDPRKSRGNGQKGFPFRDAYLTKMNEANQKTPPPTLETIMDRAVREHHQHARILSPLEVQRD
VGRLEPIPSYAGKINADRSVFPFQWKTEDWYEYEVAKVRNRRFVFENTEEDGIRGSEVTYKIVLEGFWDHHVMKLAEDVC
MFLKDVGRQIVEEKLVAVRRLLQGGAVDPELLAAFNCARAGPFGGLDEYDKEEVANFLRSDLRRLEEQCLSVINRCNVPV
PGATNIYDPHTSWPHVEKLEPWVRMAEFWTSSSDTSFTELEMSTAHYEFRKFFRVIICKLPFQSTEFEKRMYDIRHWLHR
QTSCEFHTIYRRNVIHDSAVFPTEHDPATPTTHEHHRMFSFALDWQSAPVNRLSTDTVHEGESWDAVAQRLGCSVGELKD
ANAERETIEAGVVINVPVTATRRLTSFGATPLVLPLKRTWEEAAAILDCTVEELQQCNGHAALTYQKKESEAGEFDSSVT
ELVAPLSCWTSTSESEFSPVERVHANDTLVAIARRLQCSEEALRAVNDGITDVSGLDFVRVPPEARRPRRLVEPQLRPQA
ATDALLARTIAEEETFKLKSIPHLPQNAERFPHEYHTPTSRFPPTPSETPATQDWMAYTAKYLDKQFTISAEPAPVYNVN
KLWPMQQIPGKVDQTPFEEDQTWLLHSIPVQQLEMHHHEKDLQDLPFINHEQFPRSLEWNAP

The query sequence (length=782) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pub:CJ 803 803 1.0000 0.9738 0.9738 0.0 6hiv:CJ, 6hiw:CJ, 6hiz:CJ, 7pua:CJ
2 7aor:e 810 811 0.8082 0.7802 0.7793 0.0
3 7ane:e 809 810 0.6969 0.6737 0.6728 0.0
4 1v7v:A 779 63 0.0269 0.0270 0.3333 0.69 1v7w:A, 1v7x:A
5 1v26:B 510 74 0.0332 0.0510 0.3514 2.0 1v25:A, 1v25:B, 1v26:A
6 7n4y:B 2455 59 0.0243 0.0077 0.3220 2.2 7n4y:A
7 7jil:u 85 56 0.0256 0.2353 0.3571 3.0
8 5xfa:A 581 62 0.0205 0.0275 0.2581 3.6 5xf9:A, 5xf9:E, 5xfa:E
9 3q85:B 151 37 0.0205 0.1060 0.4324 3.7 4aii:A, 4aii:B, 3q85:A
10 5ahk:A 555 97 0.0294 0.0414 0.2371 7.8 5ahk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218