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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YVVCRQCPEYRRQAAQPPHCPDYVCPLQGSHALCTCCFQPMPDRRVEREQDPRVAPQQCAVCLQPFCHLYWGCTRTGCYG
CLAPFCELNLGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTESLVALQRGVFLLSDYRVTGDTVLCYCCGLRSFRE
LTYQYRQNIPASELPVAVTSRPDCYWGRNCRTQVKAHHAMKFNHICEQTRFK

The query sequence (length=212) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2xoy:B 214 213 1.0000 0.9907 0.9953 2.51e-158 2xoc:A, 2xoc:B, 2xoy:A, 2xoz:A, 2xoz:B, 2xp0:A, 2xp0:B
2 2i22:B 178 73 0.1085 0.1292 0.3151 0.018 2i22:C
3 7veo:B 255 115 0.1085 0.0902 0.2000 0.68
4 8q4h:A 503 62 0.0802 0.0338 0.2742 1.3 8q4h:B
5 7mxb:A 672 79 0.1085 0.0342 0.2911 2.6 7mxb:B, 7mxj:A, 7mxk:A
6 2ob0:C 166 21 0.0566 0.0723 0.5714 2.7 2ob0:A, 2ob0:B, 6ppl:A, 2psw:A, 2psw:B, 2psw:C, 3tfy:A, 3tfy:B, 3tfy:C, 6wf3:A, 6wf3:B, 6wf3:C, 6wf3:D, 6wf3:E, 6wf3:F, 6wf5:A, 6wf5:B, 6wfg:A, 6wfg:C, 6wfg:E, 6wfk:A, 6wfk:B, 6wfk:C, 6wfn:A, 6wfo:A, 6wfo:B, 6wfo:C, 4x5k:A
7 6i71:A 353 93 0.1132 0.0680 0.2581 4.8 6i71:B, 6i72:A, 6i72:B, 6i73:A, 6i73:B, 6yjw:A, 6yjw:B
8 1hyo:B 419 94 0.1085 0.0549 0.2447 6.4 1hyo:A, 2hzy:A, 2hzy:B, 1qcn:A, 1qcn:B, 1qco:A, 1qco:B, 1qqj:A, 1qqj:B
9 5li1:A 334 56 0.0708 0.0449 0.2679 9.2 3a8w:A, 3a8w:B, 4dc2:A, 6ilz:A, 6ilz:C, 6ilz:E, 6ilz:G, 5li9:A, 5lih:A, 5lih:B, 3zh8:A, 3zh8:B, 3zh8:C, 1zrz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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