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BioLiP
>protein
YVNNKELLQAIIDWKTELANVRQNDTIGLAIMLIAEGLSKRFNFSGYTQSWKQEMIADGIEASIKGLHNFDETKYKNPHA
YITQACFNAFVQRIKKERKEVAKKYSYFVHNVYDSRDDDMVALVDETFIQDIYDKMT

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7d7c:F 137 137 1.0000 1.0000 1.0000 2.54e-101 7d7d:F
2 3faw:A 775 18 0.0730 0.0129 0.5556 1.9 3fax:A
3 6cxh:B 241 41 0.0876 0.0498 0.2927 2.5 7s4l:B, 7s4l:G, 7s4l:F
4 3ksm:A 276 32 0.0803 0.0399 0.3438 5.5 3ksm:B
5 8j4h:A 309 66 0.1533 0.0680 0.3182 5.6 8j4j:A
6 8dzv:A 235 50 0.1095 0.0638 0.3000 5.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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