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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDD
IVILTDDQNDLVRVPTRANMIRAMQWLVKDAQPNDSLFLHYSGHGGQTDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGV
RLTALFDSAHSGTVLDLPYTYSTKGIIKEPNIFSAADVVMLSGSKNTGAMSHAFIKVMTLQPQQSYLSLLQNMRKELAGK
YSQKPQLSSSHPIDVNLQFIM

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4f6o:A 268 260 0.9923 0.9664 0.9962 0.0 4f6p:A
2 7qp0:A 265 267 0.7471 0.7358 0.7303 8.99e-137 7qp0:B, 7qp1:A, 7qp1:B
3 4afp:A 325 243 0.3831 0.3077 0.4115 4.76e-48
4 5obt:B 230 103 0.0843 0.0957 0.2136 0.97 5obt:A
5 4hgn:A 165 54 0.0690 0.1091 0.3333 2.1 4hgn:B, 4hgn:C, 4hgn:D
6 3crv:A 551 118 0.1034 0.0490 0.2288 2.1 5h8c:A
7 3o01:A 283 71 0.0805 0.0742 0.2958 3.4 3o01:B, 3o02:A, 3o02:B
8 4ile:A 176 69 0.0766 0.1136 0.2899 3.8 2al7:A, 2h18:A, 8jc5:A, 8jc5:B, 8jca:A, 1zd9:A
9 6azt:A 274 26 0.0421 0.0401 0.4231 3.9
10 3crw:1 485 111 0.0958 0.0515 0.2252 4.6
11 7vfc:A 228 62 0.0690 0.0789 0.2903 5.6
12 6alj:A 492 78 0.0843 0.0447 0.2821 8.5 6alj:B, 6alj:C, 6alj:D, 6b5g:A, 6b5g:B, 6b5g:C, 6b5g:D, 6b5h:A, 6b5h:B, 6b5h:C, 6b5h:D, 6b5i:A, 6b5i:B, 6b5i:C, 6b5i:D, 1bi9:A, 1bi9:B, 1bi9:C, 1bi9:D, 4x2q:A, 4x2q:B, 4x2q:C, 4x2q:D
13 5a31:R 386 98 0.0958 0.0648 0.2551 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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