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BioLiP
>protein
YVICEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLY
LKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETIVHQHEYGPEENLEDDMYRKTC
TMCGHELTYEKM

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ebt:K 172 172 1.0000 1.0000 1.0000 4.91e-128 7ad8:G, 8ebu:K, 8ebx:K, 8eby:K, 6j44:A, 6lae:A, 6lae:B, 6ro4:G, 1xpa:A
2 5a39:B 115 100 0.1860 0.2783 0.3200 3.09e-11 5a39:A, 5a3d:A, 5a3d:B, 5g32:A, 5g32:B, 5g33:A, 5g33:B, 5g34:A, 5g34:B, 5g35:A, 5g35:B, 5lcl:A, 5lcl:B, 5lcm:A, 5lcm:B
3 4ddt:A 1102 105 0.1686 0.0263 0.2762 3.3 4ddu:A, 4ddv:A, 4ddv:B, 4ddw:A, 4ddx:A, 4ddx:B, 7fsf:A
4 2epr:A 48 21 0.0640 0.2292 0.5238 6.2
5 8txo:J 1162 136 0.1977 0.0293 0.2500 7.3
6 4zno:A 318 38 0.0756 0.0409 0.3421 8.0 4zno:B, 4znq:A, 4znq:B, 4znr:A, 4znr:B
7 5v3g:D 170 62 0.1047 0.1059 0.2903 8.8 5egb:A, 5eh2:F, 5eh2:E, 5ei9:E, 5ei9:F, 5v3g:A
8 7yp9:D 1285 148 0.2035 0.0272 0.2365 8.9
9 8sy7:J 1052 136 0.1977 0.0323 0.2500 9.5 8sy5:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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