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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YVGNAANGQLLYANATLDCTNCHGAMGDGLYKIDPHATVFGQNNKTLENIIAEDMPQLNPASCGAECAADIAAYIRTWAG

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8q1w:A 80 80 1.0000 1.0000 1.0000 8.78e-56 8q1w:B, 8q1w:C
2 7b21:AAA 92 88 0.4000 0.3478 0.3636 1.36e-10
3 5lo9:A 471 82 0.3250 0.0552 0.3171 0.12 5lo9:B
4 8snh:G 304 70 0.2500 0.0658 0.2857 0.59
5 8q1v:A 79 31 0.1500 0.1519 0.3871 1.1
6 1h31:A 261 13 0.1000 0.0307 0.6154 1.3 1h31:C, 1h31:E, 1h31:G, 1h32:A, 1h33:A, 2oz1:A, 2oz1:C, 2oz1:E, 2oz1:G
7 4n7c:A 174 57 0.2125 0.0977 0.2982 2.2
8 2xts:D 204 28 0.1375 0.0539 0.3929 4.9 2xts:B
9 5ysd:B 389 32 0.1750 0.0360 0.4375 5.4 5ysb:A, 5ysb:B, 5ysd:A, 5yse:A, 5yse:B, 5ysf:A, 5ysf:B
10 4qg5:A 565 18 0.1000 0.0142 0.4444 6.4 4qg5:B, 4qg5:C, 4qg5:D
11 6nlx:C 335 42 0.1875 0.0448 0.3571 6.6 6nlx:B, 6nlx:D, 5ur0:A, 5ur0:B, 5ur0:C, 5ur0:D
12 5afq:B 444 58 0.2000 0.0360 0.2759 7.1
13 1fd8:A 73 25 0.1000 0.1096 0.3200 7.5 3k7r:A, 3k7r:B, 3k7r:C, 3k7r:D, 3k7r:E, 3k7r:F, 3k7r:G, 3k7r:H, 3k7r:I, 3k7r:J, 3k7r:K, 3k7r:L, 5vde:B, 5vde:D, 5vdf:A, 5vdf:C, 5vdf:E, 5vdf:G, 5vdf:H
14 4jwf:A 187 33 0.1375 0.0588 0.3333 7.7 4jwf:B, 4jwh:A, 4jwh:B
15 6rwg:A 157 66 0.3000 0.1529 0.3636 9.3 1a1t:A, 1aaf:A, 1bj6:A, 2buo:A, 1esk:A, 2exf:A, 1f6u:A, 5i1r:A, 2jzw:A, 2l4l:A, 2m3z:A, 1mfs:A, 1q3y:A, 1q3z:A, 7r7p:I, 7r7p:L
16 6btm:E 161 38 0.1500 0.0745 0.3158 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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