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BioLiP
>protein
YTSLIHSLIEESQNQQEKNEQELLELDKWASLW

The query sequence (length=33) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3gwo:A 53 33 1.0000 0.6226 1.0000 1.19e-16 5zcx:Q, 5zcx:W
2 2kp8:A 72 26 0.7879 0.3611 1.0000 8.91e-11 2kp8:B
3 7n6u:B 595 26 0.6970 0.0387 0.8846 5.65e-08 5fuu:A, 5fuu:D, 5fuu:E, 5fuu:F, 6j5e:K, 7n6u:C, 7n6u:A, 7n6w:A, 7n6w:B, 7n6w:C, 6olp:C, 7ska:B, 7ska:O, 7ska:Z, 6vpx:C, 5y14:C, 5y14:A, 5y14:B, 5yc0:B, 5yc0:C, 5yc0:F
4 7ucf:B 137 27 0.6061 0.1460 0.7407 1.22e-07 5t3x:B, 7t75:B, 7t9a:D, 7t9b:D, 7t9b:F
5 6pwu:A 615 27 0.6667 0.0358 0.8148 1.46e-07 6j5e:I, 6ulc:C, 6ulc:A, 3vtp:C, 5yb2:E, 5yb2:F, 5yb2:D, 5yb2:A, 5yb2:B, 5yb2:C, 5yb2:M, 5yb3:E, 5yb3:F, 5yb3:D, 5yc0:A, 5yc0:D, 5yc0:E, 5z0w:E, 5zcx:A, 5zpw:A, 5zpw:E, 5zpw:C
6 6ohy:B 120 27 0.5758 0.1583 0.7037 3.12e-07 6ohy:E, 6ohy:F
7 6opn:B 124 23 0.4848 0.1290 0.6957 0.004 6opn:E, 6opn:H
8 6x5b:B 149 23 0.4848 0.1074 0.6957 0.005 6x5b:E, 6x5b:K, 6x5c:B, 6x5c:G, 6x5c:F
9 5yc0:G 31 24 0.4545 0.4839 0.6250 0.029
10 6v4t:C 51 11 0.3333 0.2157 1.0000 0.24 6v4t:A, 6v4t:B
11 3qdk:A 546 25 0.3333 0.0201 0.4400 0.37
12 1ksc:A 433 32 0.3030 0.0231 0.3125 2.2 1ksd:A
13 2y5n:B 400 23 0.2727 0.0225 0.3913 6.6 4aw3:A, 4aw3:B, 5uhu:A, 2y46:A, 2y46:B, 2y46:C, 2y5n:A, 2y5z:A, 2y5z:B, 2y5z:C, 2y98:A, 2yca:A, 2ygx:A, 2ygx:B, 2ygx:C, 2ygx:D, 3zsn:A, 3zsn:B, 3zsn:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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