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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YSKIKISGTIEVVTGLHIGGGGSPVVRDLQTKLPIIPGSSIKGKMRNLLAKHFGLKMKQESHNQDDERVLRLFGSSEKGN
IQRARLQISDAFFSEKTKEHFAQNDIAYTERVTRGSEFDFVFIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNG
RIQFKDTNIETVVGEYDSTNLKIK

The query sequence (length=184) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7uzw:E 184 184 1.0000 1.0000 1.0000 2.50e-134 7uzx:E
2 8do6:E 205 213 0.9565 0.8585 0.8263 1.54e-107 8do6:G, 8do6:F, 7uzw:A, 7uzw:B, 7uzw:C, 7uzw:D, 7uzx:A, 7uzx:B, 7uzx:C, 7uzx:D, 7uzy:D, 7uzy:C, 7uzy:A, 7uzy:B, 7uzz:D, 7uzz:C, 7uzz:A, 7uzz:B, 7v00:A, 7v00:B, 7v00:C, 7v00:D, 7v01:A, 7v01:B, 7v01:C, 7v02:A, 7v02:B, 7v02:C
3 9ash:H 214 205 0.5054 0.4346 0.4537 8.41e-49 9ash:F, 9ash:G, 9ash:I, 9asi:F, 9asi:H, 9asi:G, 9asi:I, 6xn3:F, 6xn3:H, 6xn3:G, 6xn3:I, 6xn4:F, 6xn4:H, 6xn4:G, 6xn5:I, 6xn5:F, 6xn5:H, 6xn5:G, 6xn7:F, 6xn7:H, 6xn7:G, 6xn7:I
4 6ifn:F 220 212 0.4728 0.3955 0.4104 9.20e-40 6ifk:G, 6ifk:F, 6ifk:E, 6ifl:D, 6ifl:E, 6ifl:F, 6ifn:E, 6ifn:G, 6ifr:G, 6ifr:F, 6ifr:E, 6ifu:D, 6ifu:E, 6ifu:F, 6ify:G, 6ify:F, 6ify:E, 6ifz:G, 6ifz:F, 6ifz:E, 6ig0:G, 6ig0:F, 6ig0:E, 6nud:C, 6nud:E, 6nud:N, 6nud:O, 6nud:P, 6nue:C, 6nue:E, 6nue:N, 6nue:O, 6nue:P
5 8x5d:K 235 223 0.3967 0.3106 0.3274 2.05e-32 8wfx:I, 8wfx:J, 8wfx:K, 8wfx:L, 8wfx:G, 8wfx:H, 8x5d:L, 8x5d:J, 8x5d:I, 8x5d:H
6 6mur:D 287 233 0.3913 0.2509 0.3090 2.53e-27 6iqw:C, 6iqw:D, 6mur:C, 6mus:C, 6mus:D, 6mus:K, 6mut:C, 6mut:D, 6muu:C, 6muu:D, 6o7e:C, 6o7e:D, 6o7h:C, 6o7h:D, 6o7i:C, 6o7i:D, 6o7i:K
7 4qts:C 186 179 0.3478 0.3441 0.3575 2.68e-25 4qts:D
8 4n0l:A 335 56 0.0978 0.0537 0.3214 1.19e-04 4n0l:B
9 4n0l:A 335 55 0.1141 0.0627 0.3818 5.46e-04 4n0l:B
10 8s9u:D 518 193 0.2663 0.0946 0.2539 1.33e-04 8s9t:D, 8s9v:D, 8s9x:D
11 8x5d:G 77 159 0.2120 0.5065 0.2453 0.001
12 8z9e:B 170 143 0.2174 0.2353 0.2797 0.010 8yhd:A, 8z4j:B, 8z4l:A, 8z99:A, 8z9c:A
13 8bmw:F 239 210 0.2826 0.2176 0.2476 0.024 8bmw:G
14 8yhd:B 199 153 0.2228 0.2060 0.2680 0.042 8yhd:C, 8yhd:D, 8yhd:E, 8yhd:F, 8yhd:J, 8yhd:O, 8yhe:B, 8yhe:C, 8yhe:D, 8yhe:E, 8yhe:F, 8yhe:J, 8z4j:C, 8z4j:D, 8z4j:E, 8z4j:F, 8z4j:J, 8z4l:B, 8z4l:C, 8z4l:D, 8z4l:E, 8z4l:F, 8z4l:J, 8z99:B, 8z99:C, 8z99:D, 8z99:E, 8z99:F, 8z99:J, 8z99:P, 8z9c:B, 8z9c:C, 8z9c:D, 8z9c:E, 8z9c:F, 8z9c:J, 8z9e:C, 8z9e:D, 8z9e:E, 8z9e:F, 8z9e:J
15 8bmw:H 275 95 0.1522 0.1018 0.2947 0.051 8bmw:I
16 6s6b:D 285 51 0.1033 0.0667 0.3725 0.17 6s6b:E, 6s6b:F, 6s6b:G, 6s8b:D, 6s8b:E, 6s8b:F, 6s8b:G, 6s8e:D, 6s8e:E, 6s8e:F, 6s8e:G, 6s91:D, 6s91:E, 6s91:F, 6s91:G, 6sh8:D, 6sh8:E, 6sh8:F, 6sh8:G, 6shb:D, 6shb:E, 6shb:F, 6shb:G, 6sic:D, 6sic:E, 6sic:F, 6sic:G
17 4iib:A 834 67 0.1033 0.0228 0.2836 0.79 4iib:B, 4iic:A, 4iic:B, 4iid:A, 4iid:B, 4iie:A, 4iie:B, 4iif:A, 4iif:B, 4iig:A, 4iig:B, 4iih:A, 4iih:B
18 3x1l:D 331 41 0.0761 0.0423 0.3415 0.80 3x1l:C, 3x1l:E
19 8do6:H 327 120 0.1576 0.0887 0.2417 2.7 7uzz:E, 7v00:E, 7v01:E, 7v02:E
20 4tn0:A 308 47 0.0815 0.0487 0.3191 2.8 4tn0:B, 4tn0:C
21 9ash:J 311 31 0.0761 0.0450 0.4516 3.5 9asi:J, 6xn3:J, 6xn4:J, 6xn5:J, 6xn7:J
22 5y5r:D 253 54 0.0870 0.0632 0.2963 5.1 5y5r:A, 5y5r:B, 5y5r:C, 5y5r:E, 5y5r:F
23 6ifr:H 353 16 0.0543 0.0283 0.6250 8.3 6ifk:H, 6ifl:H, 6ifn:H, 6ifu:H, 6ify:H, 6ifz:H, 6ig0:H
24 4cnz:E 112 52 0.0924 0.1518 0.3269 9.1 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
25 1kyw:C 361 166 0.1467 0.0748 0.1627 9.6 1kyw:F, 1kyz:A, 1kyz:C, 1kyz:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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