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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
YSIEKLKKEENSLAKDYYIYRLLEKNKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDAN
LTCQSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGFFKLYNYSKKYDLDLNTSLV
NKLPNHIGFKDFAQNIIIKKENPKFRHSMLEINPENVSEDSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIF
WMWLIKNNEEDLKTLSQSSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLDVLAKE
FDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESRFIPTAISVSYALGMMQFMPFLANHIGE
KELKIPNFDQDFMFKPEIAYYFGNYHLNYLESRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQES
RIYGKKVLANYIVYRHLLNDSIKISDIFENLIQN

The query sequence (length=514) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8gfp:A 516 514 1.0000 0.9961 1.0000 0.0 6cfc:A, 8gez:A, 8gf0:A, 8gf1:A, 8gfb:A, 8gfc:A, 8gfd:A, 8gfe:A, 8gff:A, 8gfg:A, 8gfh:A, 8gfi:A, 8gfl:A, 8gfm:A, 8gfq:A, 8gfs:A
2 1sly:A 618 179 0.1051 0.0874 0.3017 6.89e-13
3 5o1j:A 580 169 0.0973 0.0862 0.2959 1.14e-09 5mpq:A
4 6fcq:A 613 151 0.0856 0.0718 0.2914 1.60e-08 6fbt:A, 6fcr:A, 6fcs:A, 6fcu:A
5 4cfo:A 327 105 0.0642 0.1009 0.3143 3.82e-04 4cfo:B, 4cfp:A, 4cfp:B, 4chx:A
6 8rhf:B 327 124 0.0720 0.1131 0.2984 0.036 8rhe:A, 8rhe:B, 8rhf:A, 8rhi:A, 8rhi:B
7 7el9:A 1731 86 0.0428 0.0127 0.2558 1.5 7el9:D, 7elc:A
8 7elb:A 1937 86 0.0428 0.0114 0.2558 1.6 7ckm:A, 7elb:C, 6kld:A, 6kle:A, 6klh:A, 6klh:C
9 5wyj:CB 1098 142 0.0759 0.0355 0.2746 4.6 7ajt:UV, 7aju:UV, 7d4i:RE, 7d5s:RE, 7d5t:RE, 7d63:RE, 6ke6:RE, 6lqp:RE, 6lqq:RE, 6lqr:RE, 6lqs:RE, 6lqt:RE, 6lqu:RE, 7suk:NH, 5wyk:CB, 6zqb:UV, 6zqc:UV, 6zqd:UV, 6zqe:UV
10 5n1j:A 206 76 0.0350 0.0874 0.2368 6.6 5n1j:B, 5n1j:C, 5n1j:D, 5n1p:A, 5n1p:D, 5n1p:B, 5n1p:C, 5nc6:A, 5nc6:B, 5nc6:C, 5nc6:D, 5nc9:A, 5nc9:B, 5nc9:C, 5nc9:D, 5ncd:A, 5ncd:B, 5ncd:C, 5ncd:D, 5nek:A, 5nek:B, 5nek:C, 5nek:D, 5nel:A, 5nel:B, 5nel:C, 5nel:D
11 5yvg:B 764 50 0.0272 0.0183 0.2800 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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