Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
YSIEKLKKEENSLAKDYYIYRLLEKNKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDAN
LTCQSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGFFKLYNYSKKYDLDLNTSLV
NKLPNHIGFKDFAQNIIIKKENPKFRHSMLEINPENVSEDSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIF
WMWLIKNNEEDLKTLSQSSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLDVLAKE
FDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESRFIPTAISVSYALGMMQFMPFLANHIGE
KELKIPNFDQDFMFKPEIAYYFGNYHLNYLESRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQES
RIYGKKVLANYIVYRHLLNDSIKISDIFENLI

The query sequence (length=512) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8gfp:A 516 512 1.0000 0.9922 1.0000 0.0 6cfc:A, 8gez:A, 8gf0:A, 8gf1:A, 8gfb:A, 8gfc:A, 8gfd:A, 8gfe:A, 8gff:A, 8gfg:A, 8gfh:A, 8gfi:A, 8gfl:A, 8gfm:A, 8gfq:A, 8gfs:A
2 1sly:A 618 179 0.1055 0.0874 0.3017 6.54e-13
3 5o1j:A 580 169 0.0977 0.0862 0.2959 1.20e-09 5mpq:A
4 6fcq:A 613 151 0.0859 0.0718 0.2914 1.53e-08 6fbt:A, 6fcr:A, 6fcs:A, 6fcu:A
5 4cfo:A 327 105 0.0645 0.1009 0.3143 3.86e-04 4cfo:B, 4cfp:A, 4cfp:B, 4chx:A
6 8rhf:B 327 124 0.0723 0.1131 0.2984 0.035 8rhe:A, 8rhe:B, 8rhf:A, 8rhi:A, 8rhi:B
7 7el9:A 1731 86 0.0430 0.0127 0.2558 1.5 7el9:D, 7elc:A
8 7elb:A 1937 86 0.0430 0.0114 0.2558 1.6 7ckm:A, 7elb:C, 6kld:A, 6kle:A, 6klh:A, 6klh:C
9 5wyj:CB 1098 142 0.0762 0.0355 0.2746 4.9 7ajt:UV, 7aju:UV, 7d4i:RE, 7d5s:RE, 7d5t:RE, 7d63:RE, 6ke6:RE, 6lqp:RE, 6lqq:RE, 6lqr:RE, 6lqs:RE, 6lqt:RE, 6lqu:RE, 7suk:NH, 5wyk:CB, 6zqb:UV, 6zqc:UV, 6zqd:UV, 6zqe:UV
10 5n1j:A 206 76 0.0352 0.0874 0.2368 6.4 5n1j:B, 5n1j:C, 5n1j:D, 5n1p:A, 5n1p:D, 5n1p:B, 5n1p:C, 5nc6:A, 5nc6:B, 5nc6:C, 5nc6:D, 5nc9:A, 5nc9:B, 5nc9:C, 5nc9:D, 5ncd:A, 5ncd:B, 5ncd:C, 5ncd:D, 5nek:A, 5nek:B, 5nek:C, 5nek:D, 5nel:A, 5nel:B, 5nel:C, 5nel:D
11 5yvg:B 764 50 0.0273 0.0183 0.2800 9.6

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218