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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YSGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNP
GAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAG
DLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISV
GIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFK
PLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPG
FQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKV
EAMNKRLGSLVDEFKELVYPPDYNPEG

The query sequence (length=507) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bh3:B 507 507 1.0000 1.0000 1.0000 0.0 8asc:A, 8asc:E, 8asc:K, 8asc:O, 8bh3:T, 8bhv:a, 8bhv:h, 8bhy:B, 8bhy:T, 8bot:G, 8bot:T, 6erf:A, 6erf:G, 6erg:A, 6erg:D, 6erh:A, 6erh:C, 8eza:A, 8eza:J, 8ezb:A, 8ezb:J, 1jey:A, 7k1j:B, 7lsy:A, 7lsy:J, 7lt3:A, 7lt3:J, 7nfc:B, 7nfc:G, 7sgl:B, 7su3:B, 5y3r:A, 7z6o:A, 7z87:B, 7z88:B, 6zha:B, 6zhe:G, 6zhe:B, 7zvt:A, 7zwa:A, 7zyg:A
2 7nfe:B 475 503 0.9369 1.0000 0.9443 0.0 8bot:B
3 5y58:A 548 508 0.2150 0.1989 0.2146 1.31e-08 5y58:E, 5y58:C
4 5y58:B 568 131 0.0710 0.0634 0.2748 0.015 5y58:D, 5y58:F, 5y59:B
5 6tyw:A 218 81 0.0394 0.0917 0.2469 1.1 6tyt:A, 6tyu:A, 6tyv:A, 6tyx:A, 6tyx:B, 6tyz:A
6 1fay:A 236 75 0.0454 0.0975 0.3067 7.9 1f9k:A, 1f9k:B, 1fay:B, 1fay:C, 1fay:D, 1fay:E, 1fay:F, 1fay:G, 1fay:H
7 5txe:A 652 27 0.0256 0.0199 0.4815 8.8 5txe:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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