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BioLiP
>protein
YRPSRPSNPRDDWKLWLVVNPGTWLIPLLITFLATALIVHSFVFTHEAYNPLTY

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6q53:D 57 54 1.0000 0.9474 1.0000 4.79e-35 6q53:A
2 8fb9:A 56 44 0.4630 0.4464 0.5682 1.02e-11 8fb9:D, 8fb9:C, 8fb9:G, 8fb9:I, 8fb9:K, 8fb9:c, 8fb9:e, 8fbb:Q, 8fbb:S, 8fbb:U, 8fbb:W, 8fbb:Y, 8fbb:a, 8fbb:c, 8fbb:e, 7tuw:A, 7tuw:D, 7tuw:C, 7tuw:G, 7tuw:I, 7tuw:K, 7tuw:c, 7tuw:e, 7tv3:Q, 7tv3:S, 7tv3:U, 7tv3:W, 7tv3:Y, 7tv3:a, 7tv3:c, 7tv3:e
3 6zxa:A 69 44 0.2778 0.2174 0.3409 4.51e-08 6zxa:C, 6zxa:M, 6zxa:E, 6zxa:G, 6zxa:I, 6zxa:K
4 8fb9:M 56 19 0.2593 0.2500 0.7368 4.17e-05 8fb9:O, 8fb9:Q, 8fb9:S, 8fb9:U, 8fb9:W, 8fb9:Y, 8fb9:a, 8fbb:g, 8fbb:C, 8fbb:D, 8fbb:G, 8fbb:I, 8fbb:K, 8fbb:M, 8fbb:O, 1lgh:A, 1lgh:D, 1lgh:G, 1lgh:J, 7tuw:M, 7tuw:O, 7tuw:Q, 7tuw:S, 7tuw:U, 7tuw:W, 7tuw:Y, 7tuw:a, 7tv3:A, 7tv3:C, 7tv3:D, 7tv3:G, 7tv3:I, 7tv3:K, 7tv3:M, 7tv3:O
5 6z5r:T 48 38 0.1852 0.2083 0.2632 0.12 6z5r:C, 6z5r:E, 6z5r:A, 6z5r:G, 6z5r:J, 6z5r:N, 6z5r:P, 6z5r:9, 6z5r:R, 6z5r:V, 6z5r:Y, 6z5r:1, 6z5r:3, 6z5r:5, 6z5r:7, 6z5s:R, 6z5s:1, 6z5s:Y, 6z5s:3, 6z5s:5, 6z5s:V, 6z5s:T, 6z5s:A, 6z5s:C, 6z5s:E, 6z5s:P, 6z5s:N, 6z5s:J, 6z5s:G
6 7xxf:S 58 38 0.1852 0.1724 0.2632 0.13 7xxf:9, 7xxf:D, 7xxf:A, 7xxf:F, 7xxf:I, 7xxf:K, 7xxf:O, 7xxf:Q, 7xxf:U, 7xxf:W, 7xxf:Y, 7xxf:1, 7xxf:3, 7xxf:5, 7xxf:7
7 2fkw:A 53 41 0.2407 0.2453 0.3171 0.15 2fkw:C, 2fkw:E, 2fkw:G, 2fkw:I, 2fkw:K, 2fkw:M, 2fkw:O, 2fkw:R, 1kzu:A, 1kzu:D, 1kzu:G, 1nkz:A, 1nkz:C, 1nkz:E
8 8wdv:Y 64 40 0.2222 0.1875 0.3000 0.17 7vrj:S, 7vrj:U, 8wdu:U, 8wdu:W, 8wdu:D, 8wdu:F, 8wdu:S, 8wdu:Y, 8wdv:W, 8wdv:D, 8wdv:F, 8wdv:S, 8wdv:U
9 6et5:3 58 39 0.2222 0.2069 0.3077 0.17 6et5:P, 6et5:S, 6et5:V, 6et5:Y, 6et5:b, 6et5:e, 6et5:h, 6et5:k, 6et5:n, 6et5:q, 6et5:t, 6et5:w, 6et5:z, 6et5:6, 6et5:F, 6et5:K
10 7zdi:A 49 41 0.2593 0.2857 0.3415 0.21 7zdi:C, 7zdi:E, 7zdi:Q, 7zdi:G, 7zdi:I, 7zdi:K, 7zdi:M, 7zdi:O
11 1ijd:A 46 37 0.3148 0.3696 0.4595 0.32 1ijd:C, 1ijd:E
12 7vrj:3 65 42 0.2222 0.1846 0.2857 0.33 8wdu:3, 8wdv:3
13 7vrj:Y 63 40 0.2037 0.1746 0.2750 0.43 7vrj:D, 7vrj:F, 7vrj:W
14 7oy8:8 48 38 0.1852 0.2083 0.2632 0.92 7eqd:A, 7eqd:D, 7eqd:9, 7eqd:F, 7eqd:I, 7eqd:K, 7eqd:O, 7eqd:Q, 7eqd:S, 7eqd:U, 7eqd:W, 7eqd:Y, 7eqd:1, 7eqd:3, 7eqd:5, 7eqd:7, 7oy8:Z, 7oy8:X, 7oy8:2, 7oy8:4, 7oy8:6, 7oy8:D, 7oy8:A, 7oy8:E, 7oy8:F, 7oy8:G, 7oy8:J, 7oy8:N, 7oy8:R, 7oy8:T, 7oy8:V
15 8k5o:3 51 40 0.2222 0.2353 0.3000 1.3
16 5lwx:A 554 31 0.2222 0.0217 0.3871 1.3 5lm8:A, 5lww:A
17 3fqd:B 332 21 0.1481 0.0241 0.3810 6.1 3fqg:A, 6wui:A
18 7c9r:5 74 46 0.2407 0.1757 0.2826 6.3 7c9r:A, 7c9r:D, 7c9r:F, 7c9r:I, 7c9r:K, 7c9r:O, 7c9r:S, 7c9r:U, 7c9r:W, 7c9r:Y, 7c9r:1, 7c9r:3, 7c9r:7
19 5b5m:A 60 35 0.1481 0.1333 0.2286 6.9 5b5m:9, 5b5m:D, 5b5m:F, 5b5m:I, 5b5m:K, 5b5m:O, 5b5m:Q, 5b5m:S, 5b5m:U, 5b5m:W, 5b5m:Y, 5b5m:1, 5b5m:3, 5b5m:5, 5b5m:7, 5b5m:AA, 5b5m:m, 5b5m:l, 5b5m:p, 5b5m:r, 5b5m:u, 5b5m:w, 5b5m:AC, 5b5m:AE, 5b5m:AG, 5b5m:AI, 5b5m:AK, 5b5m:d, 5b5m:f, 5b5m:h, 5b5m:j, 5b5n:A, 5b5n:9, 5b5n:D, 5b5n:F, 5b5n:I, 5b5n:K, 5b5n:O, 5b5n:Q, 5b5n:S, 5b5n:U, 5b5n:W, 5b5n:Y, 5b5n:1, 5b5n:3, 5b5n:5, 5b5n:7, 5b5n:AA, 5b5n:m, 5b5n:j, 5b5n:l, 5b5n:p, 5b5n:r, 5b5n:u, 5b5n:w, 5b5n:AC, 5b5n:AE, 5b5n:AG, 5b5n:AI, 5b5n:AK, 5b5n:d, 5b5n:f, 5b5n:h, 7c52:7, 7c52:S, 7c52:A, 7c52:D, 7c52:F, 7c52:9, 7c52:I, 7c52:K, 7c52:O, 7c52:Q, 7c52:U, 7c52:W, 7c52:Y, 7c52:1, 7c52:3, 7c52:5, 4v8k:AA, 4v8k:AD, 4v8k:A9, 4v8k:AF, 4v8k:AI, 4v8k:AK, 4v8k:AO, 4v8k:AQ, 4v8k:AS, 4v8k:AW, 4v8k:AU, 4v8k:AY, 4v8k:A1, 4v8k:A3, 4v8k:A5, 4v8k:A7, 4v8k:BA, 4v8k:BD, 4v8k:B9, 4v8k:BF, 4v8k:BI, 4v8k:BK, 4v8k:BO, 4v8k:BQ, 4v8k:BS, 4v8k:BU, 4v8k:BW, 4v8k:BY, 4v8k:B1, 4v8k:B3, 4v8k:B5, 4v8k:B7, 3wmm:A, 3wmm:7, 3wmm:9, 3wmm:D, 3wmm:F, 3wmm:I, 3wmm:K, 3wmm:O, 3wmm:Q, 3wmm:S, 3wmm:U, 3wmm:W, 3wmm:Y, 3wmm:1, 3wmm:3, 3wmm:5, 5y5s:7, 5y5s:S, 5y5s:A, 5y5s:D, 5y5s:F, 5y5s:I, 5y5s:K, 5y5s:O, 5y5s:Q, 5y5s:U, 5y5s:W, 5y5s:Y, 5y5s:1, 5y5s:3, 5y5s:5, 5y5s:9
20 7pbw:AA 50 44 0.2778 0.3000 0.3409 7.1 7pbw:AB, 7pbw:AC, 7pbw:AD, 7pbw:AE, 7pbw:AF, 7pbw:AG, 7pbw:AH, 7pbw:AI
21 8jkz:A 584 15 0.1296 0.0120 0.4667 7.3 8in8:B, 8jl0:A, 8k87:B, 8k87:G, 8k88:B
22 7on9:A 393 23 0.1852 0.0254 0.4348 7.9 7on9:B, 7on9:C, 7on9:D
23 4rh7:A 3005 49 0.2222 0.0040 0.2449 8.2
24 6dcd:A 406 20 0.1667 0.0222 0.4500 8.8
25 8si6:A 1107 19 0.1667 0.0081 0.4737 9.5 8si2:A, 8si2:B, 8si2:D, 8si2:C, 8si3:A, 8si3:B, 8si3:C, 8si3:D, 8si4:A, 8si4:B, 8si4:C, 8si4:D, 8si5:A, 8si5:B, 8si5:D, 8si5:C, 8si6:B, 8si6:C, 8si6:D, 8si7:A, 8si7:B, 8si7:D, 8si7:C, 8si8:A, 8si8:B, 8si8:D, 8si8:C, 8sia:A, 8sia:D, 8sia:B, 8sia:C, 8w2l:A, 8w2l:B, 8w2l:C, 8w2l:D
26 6sc2:B 3930 49 0.2222 0.0031 0.2449 9.6 6rla:A, 6rla:B, 6sc2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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