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BioLiP
>protein
YRKDFIDTMTRELYDAFLHERLYLIYMDSRAELKRNSTLKKKFFEKWQAS

The query sequence (length=50) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4mbe:E 51 50 1.0000 0.9804 1.0000 1.68e-31 4c31:A, 4c31:D, 4mbe:B
2 1xzq:A 449 26 0.2000 0.0223 0.3846 4.5 1xzq:B
3 4x8b:A 428 36 0.2200 0.0257 0.3056 4.6 4x8b:B, 4x8d:A, 4x8d:B, 4x8e:A, 4x8e:B
4 7e0d:A 604 26 0.2400 0.0199 0.4615 9.3 7e0c:A, 2e1m:A, 2e1m:B, 2e1m:C, 8jpw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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