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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YRARPPPRRRPGPRWPDPEDLLTPRWQLGPRYAAKQFARYGAASGVVPGSLWPSPEQLRELEAEEREWYPSLATMQESLR
VKQLAEEQKRREREQHIAECMAKMPQMIVNWQQQQRENWEKAQADKERRARLQAEAQELLGYQVDPRSARFQELL

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7l08:q 168 155 1.0000 0.9226 1.0000 8.89e-109 7a5f:q3, 7a5g:q3, 7a5i:q3, 7a5j:q, 7a5k:q3, 8any:q, 6i9r:q, 8k2a:L8, 8k2b:L8, 7l20:q, 6nu2:q, 6nu3:q, 7o9k:q, 7o9m:q, 7odr:q, 7ods:q, 7odt:q, 7of0:q, 7of2:q, 7of3:q, 7of4:q, 7of5:q, 7of6:q, 7of7:q, 7og4:q, 7oi8:q, 7oia:q, 7oic:q, 7oid:q, 8oir:Bg, 8oit:Bg, 8pk0:q, 7po4:q, 7qh6:q, 7qh7:q, 7qi4:q, 7qi5:q, 7qi6:q, 8qsj:q, 6vlz:q, 6vmi:q, 8xt0:L8, 8xt1:L8, 8xt2:L8, 8xt3:L8, 6zm5:q, 6zm6:q, 6zs9:q, 6zsa:q, 6zsb:q, 6zsc:q, 6zsd:q, 6zse:q, 6zsg:q
2 6gaw:Bv 135 135 0.7226 0.8296 0.8296 2.39e-64 5aj4:Bv, 6gb2:Bv, 7nqh:Bv, 7nql:Bv, 7nsh:Bv, 7nsi:Bv, 7nsj:Bv, 8oin:Bg, 8oiq:Bg, 6ydp:Bv, 6ydw:Bv
3 8a22:AJ 122 34 0.0774 0.0984 0.3529 0.028 8apn:AJ, 8apo:AJ
4 7pkt:J 114 29 0.0581 0.0789 0.3103 1.6
5 1bmo:A 233 60 0.1290 0.0858 0.3333 3.5 1bmo:B, 1nub:A, 1nub:B, 1sra:A, 2v53:A
6 7l08:V 206 37 0.0839 0.0631 0.3514 4.5 7a5f:V3, 7a5g:V3, 7a5h:V, 7a5i:V3, 7a5j:V, 7a5k:V3, 8any:V, 6i9r:V, 3j7y:V, 3j9m:V, 8k2a:LX, 8k2b:LX, 7l20:V, 6nu2:V, 6nu3:V, 7o9k:V, 7o9m:V, 7odr:V, 7ods:V, 7odt:V, 7of2:V, 7of3:V, 7of4:V, 7of5:V, 7of6:V, 7og4:XV, 7oi7:V, 7oi8:V, 7oi9:V, 7oia:V, 7oib:V, 7oic:V, 7oid:V, 7oie:V, 8oir:BC, 8oit:BC, 5ool:V, 5oom:V, 7pd3:V, 8pk0:V, 7po4:V, 7qi4:V, 7qi5:V, 7qi6:V, 8qsj:V, 8qu1:V, 8qu5:V, 6vlz:V, 6vmi:V, 8xt0:LX, 8xt1:LX, 8xt2:LX, 8xt3:LX, 6zm5:V, 6zm6:V, 6zs9:XV, 6zsa:XV, 6zsb:XV, 6zsc:XV, 6zsd:XV, 6zse:XV, 6zsg:XV
7 4nyu:A 406 31 0.0839 0.0320 0.4194 6.8 4ny2:A, 4ny2:B, 4nyy:A, 4nyy:B, 4nyy:C, 4nyy:D, 4nz1:A, 4nz1:B, 4nz3:A, 4nz3:B, 4nz4:A, 4nz4:B, 4oui:A, 4oui:B
8 3wx7:A 402 24 0.0581 0.0224 0.3750 9.5 3wx7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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