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BioLiP
>protein
YPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR

The query sequence (length=33) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3kzi:F 38 33 1.0000 0.8684 1.0000 4.84e-18 3a0b:F, 3a0b:f, 3a0h:F, 3a0h:f, 2axt:F, 2axt:f, 5b5e:F, 5b5e:f, 5b66:F, 5b66:f, 7cji:F, 7cji:f, 7cjj:F, 7cjj:f, 7cou:F, 7cou:f, 7czl:F, 7d1t:F, 7d1t:f, 7d1u:F, 7d1u:f, 6dhe:F, 6dhe:f, 6dhf:F, 6dhf:f, 6dhg:F, 6dhg:f, 6dhh:F, 6dhh:f, 6dho:F, 6dho:f, 6dhp:F, 6dhp:f, 5e79:F, 5e79:f, 5e7c:F, 5e7c:f, 7eda:F, 9evx:F, 9evx:f, 8ez5:F, 8ez5:f, 8f4c:F, 8f4c:f, 8f4d:F, 8f4d:f, 8f4e:F, 8f4e:f, 8f4f:F, 8f4f:f, 8f4g:F, 8f4g:f, 8f4h:F, 8f4h:f, 8f4i:F, 8f4i:f, 8f4j:F, 8f4j:f, 8f4k:F, 8f4k:f, 4fby:F, 4fby:S, 8gn0:F, 8gn0:f, 8gn1:F, 8gn1:f, 8gn2:F, 8gn2:f, 5gth:F, 5gth:f, 5gti:F, 5gti:f, 5h2f:F, 5h2f:f, 4il6:F, 4il6:f, 8ir5:F, 8ir5:f, 8ir6:F, 8ir6:f, 8ir7:F, 8ir7:f, 8ir8:F, 8ir8:f, 8ir9:F, 8ir9:f, 8ira:F, 8ira:f, 8irb:F, 8irb:f, 8irc:F, 8irc:f, 8ird:F, 8ird:f, 8ire:F, 8ire:f, 8irf:F, 8irf:f, 8irg:F, 8irg:f, 8irh:F, 8irh:f, 8iri:F, 8iri:f, 4ixq:F, 4ixq:f, 4ixr:F, 4ixr:f, 6jlj:F, 6jlj:f, 6jlk:F, 6jlk:f, 6jll:F, 6jll:f, 6jlm:F, 6jlm:f, 6jln:F, 6jln:f, 6jlo:F, 6jlo:f, 6jlp:F, 6jlp:f, 5kaf:F, 5kaf:f, 5kai:F, 5kai:f, 5mx2:F, 5mx2:f, 7nho:F, 7nhp:F, 7nhq:F, 4pbu:F, 4pbu:f, 4pj0:F, 4pj0:f, 7rf1:F, 7rf1:f, 7rf2:F, 7rf2:f, 7rf3:F, 7rf3:f, 7rf4:F, 7rf4:f, 7rf5:F, 7rf5:f, 7rf6:F, 7rf6:f, 7rf7:F, 7rf7:f, 7rf8:F, 7rf8:f, 4rvy:F, 4rvy:f, 1s5l:F, 1s5l:f, 5tis:F, 5tis:f, 4tnh:F, 4tnh:f, 4tni:F, 4tni:f, 4tnj:F, 4tnj:f, 4tnk:F, 4tnk:f, 4ub6:F, 4ub6:f, 4ub8:F, 4ub8:f, 5v2c:F, 5v2c:f, 4v62:AF, 4v62:BF, 4v82:AF, 4v82:BF, 6w1o:F, 6w1o:f, 6w1p:F, 6w1p:f, 6w1q:F, 6w1q:f, 6w1r:F, 6w1r:f, 6w1t:F, 6w1t:f, 6w1u:F, 6w1u:f, 6w1v:F, 6w1v:f, 1w5c:F, 1w5c:L, 5ws5:F, 5ws5:f, 5ws6:F, 5ws6:f, 3wu2:F, 3wu2:f, 7yq2:F, 7yq2:f, 7yq7:F, 7yq7:f, 5zzn:F, 5zzn:f
2 8wql:fD 37 33 0.9394 0.8378 0.9394 2.89e-17 7n8o:F, 7n8o:f, 7rcv:F, 7rcv:f, 8tow:F, 8tow:f, 6wj6:F, 8wql:FD, 8wql:FE, 8wql:F1, 8wql:f1, 8wql:fE
3 8bd3:F 37 33 0.8788 0.7838 0.8788 3.90e-16 8bd3:f, 7pi0:F, 7pi0:f, 7pi5:F, 7pi5:f, 7pin:F, 7pin:f, 7pin:F1, 7pin:f1, 7piw:F, 7piw:f, 7piw:F1, 7piw:f1, 7pnk:F, 7pnk:f
4 8kde:F 34 33 0.8485 0.8235 0.8485 2.00e-15 6kaf:F, 6kaf:f, 8zee:F
5 3jcu:F 32 32 0.7879 0.8125 0.8125 1.10e-14 8c29:F, 8c29:f, 3jcu:f, 5xnl:F, 5xnl:f, 5xnm:F, 5xnm:f, 6yp7:f, 6yp7:F
6 7y5e:FL 41 33 0.7576 0.6098 0.7576 2.89e-14 6kac:F, 6kac:f, 6kad:F, 6kad:f, 8r2i:F, 8wb4:F, 8wb4:f, 8xlp:f, 8xlp:F, 7y5e:F6, 7y5e:f6, 7y5e:fL, 7y7a:F9, 7y7a:f9, 7y7a:FE, 7y7a:fE, 7y7a:FO, 7y7a:fO, 7y7a:FZ, 7y7a:fZ, 7y7a:Fm, 7y7a:fm
7 6jlu:F 32 32 0.7576 0.7812 0.7812 2.05e-13 8iwh:f, 8iwh:F, 8j5k:F, 8j5k:f, 6jlu:f, 4yuu:F2
8 8eqm:F 30 30 0.6667 0.7333 0.7333 9.08e-13 8eqm:f, 7sa3:F
9 7ymi:F 30 30 0.6667 0.7333 0.7333 4.39e-11 7ymi:f, 7ymm:1F, 7ymm:2F, 7ymm:3F, 7ymm:4F
10 4za2:D 247 26 0.2727 0.0364 0.3462 1.2
11 8wql:ED 78 21 0.2424 0.1026 0.3810 8.1 8wql:EE, 8wql:E1, 8wql:e1, 8wql:eD, 8wql:eE

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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