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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YNIEKVLNVYLRDLRIESLNNNELEILIMIRECCEVIKKDYKTEFNEICNFILQNNVKSCYDINDVKNIIIETINSDFRP
SVILASISLLSIIIKKKKDENNEVVDDDLALNELINKFSSYQKDIISFVEKN

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6xy6:C 138 132 1.0000 0.9565 1.0000 2.10e-86 6xy4:A, 6xy6:A, 6xy6:E, 6xy6:G, 6xy6:I, 6xy6:K, 6xy6:M, 6xy6:O
2 4uf2:A 136 133 0.3712 0.3603 0.3684 5.71e-16 4uf1:A, 4uf3:A
3 2jby:A 127 123 0.2652 0.2756 0.2846 4.98e-07
4 6tqp:A 142 111 0.3030 0.2817 0.3604 1.15e-06 6tqq:A, 6trr:A
5 5olc:C 351 62 0.1212 0.0456 0.2581 1.3 5olc:D, 5olc:F, 5olc:G, 5olc:H
6 2f6d:A 492 90 0.2121 0.0569 0.3111 3.3
7 7x6s:A 1453 25 0.0909 0.0083 0.4800 5.8 5ltf:A, 5ltn:A, 5ltn:B, 5t2t:A
8 7x6v:A 1381 25 0.0909 0.0087 0.4800 5.8
9 4v9f:X 90 29 0.0833 0.1222 0.3793 7.6 3cc2:X, 3cc4:X, 3cc7:X, 3cce:X, 3ccj:X, 3ccl:X, 3ccm:X, 3ccq:X, 3ccr:X, 3ccs:X, 3ccu:X, 3ccv:X, 3cd6:X, 3cma:X, 3cme:X, 3cpw:W, 3cxc:W, 3g4s:X, 3g6e:X, 3g71:X, 3i55:X, 3i56:X, 1jj2:W, 1k73:Y, 1k8a:Y, 1k9m:Y, 1kc8:Y, 1kd1:Y, 1kqs:W, 1m1k:Y, 1m90:Y, 1n8r:Y, 1nji:Y, 2otj:X, 2otl:X, 3ow2:W, 1q7y:Y, 1q81:Y, 1q82:Y, 1q86:Y, 2qa4:X, 2qex:X, 1qvf:W, 1qvg:W, 1s72:X, 1vq4:X, 1vq5:X, 1vq6:X, 1vq7:X, 1vq8:X, 1vq9:X, 1vqk:X, 1vql:X, 1vqm:X, 1vqn:X, 1vqo:X, 1vqp:X, 1w2b:W, 1yhq:X, 1yi2:X, 1yij:X, 1yit:X, 1yj9:X, 1yjn:X, 1yjw:X

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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