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BioLiP
>protein
YMDEDVRNTLKETAFSISEIPFIQEDLSNGEINSRIQEYTKHFIEAINDVDIIVVADMRGVKYSHLDEKQIGQVFVNEDK
KEVLTQGSSYYSLMKGSMGETLRWFQPVMYNGKQVGFIMVGKYYNEIQ

The query sequence (length=128) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4onx:F 129 125 0.9766 0.9690 1.0000 1.05e-90 4onx:A, 4onx:C, 4onx:B, 4onx:D, 4onx:E
2 1p0z:A 131 109 0.2578 0.2519 0.3028 2.15e-09 2j80:A, 2j80:B, 1p0z:B, 1p0z:C, 1p0z:D, 1p0z:E, 1p0z:F, 1p0z:G, 1p0z:H, 1p0z:I, 1p0z:J
3 7v4x:A 529 28 0.0938 0.0227 0.4286 0.95 6a37:A, 7v50:A, 7v51:A
4 8ki6:A 1580 101 0.1953 0.0158 0.2475 0.95
5 8ki8:A 1621 101 0.1953 0.0154 0.2475 1.0
6 8ki7:A 2003 101 0.1953 0.0125 0.2475 1.2
7 5e6m:A 519 26 0.0859 0.0212 0.4231 1.3 4kr2:A, 4kr3:A
8 4qei:A 562 27 0.0859 0.0196 0.4074 1.6
9 2zt5:A 530 27 0.0859 0.0208 0.4074 1.6 2zt6:A, 2zt7:A, 2zt8:A, 2zxf:A
10 5e6m:B 506 27 0.0859 0.0217 0.4074 1.8
11 7k5b:B 4524 46 0.1016 0.0029 0.2826 3.8 8bx8:B, 7k58:B, 7kek:B
12 2p8u:A 462 125 0.2266 0.0628 0.2320 3.8 2p8u:B
13 8gr7:A 326 70 0.1250 0.0491 0.2286 5.5 8gr7:B
14 9ev4:A 553 41 0.1172 0.0271 0.3659 7.4
15 9ev3:A 577 41 0.1172 0.0260 0.3659 7.5 9ev5:A, 9ev5:B, 9ev5:C, 9ev5:D, 9ev6:A, 9ev6:B, 9ev6:C, 9ev6:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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