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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
YKFQSNVSGSKVATRDNYQRWRESGGDVRVAQDILREAEVQDELRAMVLGCRDLSELQVVVCECGADLNPFLVCAAAARL
HKLKQATPPGASPAALARRVGESLMVLLQDRAAEAPLSQLAGAAHGLAEAGLAPGAALLEALAARCEAASPRGGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASELGAGMLRPLCDALTPRV
PALSCADVASLATGLAAALGAASPSHFGSLPRLLSDLLLLRGPGQFGGRNFASVALALALVTSLPPAFWSKLAAVALPEV
PAMDAGSLSRLAGAFCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

The query sequence (length=498) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7pkt:Q 498 498 1.0000 1.0000 1.0000 0.0
2 3hhs:B 656 42 0.0281 0.0213 0.3333 0.69
3 7d6v:A 601 56 0.0442 0.0366 0.3929 0.79 7d6x:A
4 3inn:C 284 76 0.0402 0.0704 0.2632 2.0 3inn:A, 3inn:D
5 3nt6:A 565 33 0.0321 0.0283 0.4848 4.0 3nt6:B, 3nta:A, 3nta:B, 3ntd:A, 3ntd:B, 4ocg:A, 4ocg:B
6 3q10:A 285 132 0.0703 0.1228 0.2652 7.2 3q10:B, 3q10:C, 3q10:D, 3q12:A, 3q12:B, 3q12:C, 3q12:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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