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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFFLFRMAPVAT
FMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGRSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLIC
VGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSG
LCTLFFLGGWLPILDLPIFKKIPGSIWFSIKVLFFLFLYIWVRAAFPRYRYDQLMGLGWKVFLPLSLAWVVSVSGLLVTF
QWLP

The query sequence (length=324) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ar7:H 324 324 1.0000 1.0000 1.0000 0.0 7a23:H, 7aqq:H, 7ar8:H, 7arb:H, 8bef:H, 8bpx:H, 8bq5:H, 8bq6:H, 8e73:1M
2 8q0m:H 318 299 0.4506 0.4591 0.4883 9.71e-98 8q1u:H, 8q25:H, 8q45:H, 8q47:H, 8q48:H, 8q4a:H, 7qsk:H, 7r45:H, 7r46:H, 7r47:H, 7r48:H, 7r4c:H, 7r4g:H, 7zd6:H, 6zka:H, 6zkc:H, 6zkd:H, 6zke:H, 6zkf:H, 6zkh:H, 6zki:H, 6zkj:H, 6zkl:H, 6zkm:H, 6zkn:H
3 5gup:r 318 299 0.4383 0.4465 0.4749 6.69e-96 8uep:1H, 8ueq:1H, 8uer:1H, 8uez:1H, 7v2c:s, 7v2d:s, 7v2e:s, 7v2f:s, 7v2h:s, 7v2k:s, 7v2r:s, 7v30:s, 7v31:s, 7v32:s, 7v33:s, 7v3m:s, 7vbl:s, 7vbp:s, 7vc0:s, 7vwl:s, 7vy1:s, 7vy9:s, 7vye:s, 7vyg:s, 7vyi:s, 7vys:s, 7vz8:s, 7vzv:s, 7vzw:s, 7w00:s, 7w0h:s, 7w0r:s, 7w0y:s, 7w1o:s, 7w1p:s, 7w1t:s, 7w1u:s, 7w1v:s, 7w1z:s, 7w20:s, 7w2k:s, 7w2l:s, 7w2r:s, 7w2u:s, 7w2y:s, 7w31:s, 7w32:s, 7w35:s, 7w4c:s, 7w4d:s, 7w4e:s, 7w4f:s, 7w4g:s, 7w4j:s, 7w4k:s, 7w4l:s, 7w4m:s, 7w4n:s, 7w4q:s
4 7b93:H 318 310 0.4475 0.4560 0.4677 1.37e-95 8ca3:H, 8ca5:H, 8iao:H, 8iap:H, 8ib4:H, 8ib5:H, 8ib9:H, 8iba:H, 8ibd:H, 8ibe:H, 8ic2:H, 8ic3:H, 7psa:H, 8rgp:H, 8rgr:H
5 8qby:H 342 299 0.4877 0.4620 0.5284 4.33e-95
6 5xtc:s 318 299 0.4383 0.4465 0.4749 6.49e-91 5xtd:s, 5xth:s, 5xti:s, 5xti:Bs
7 8e9g:H 395 325 0.4537 0.3722 0.4523 1.06e-87 8e9h:H, 8e9i:H
8 6q8o:H 353 328 0.4506 0.4136 0.4451 7.30e-82 6q8o:Q
9 6rfr:1 340 332 0.4444 0.4235 0.4337 2.40e-80 6h8k:1, 6y79:1
10 7z7s:H 322 288 0.3920 0.3944 0.4410 1.12e-79 7p61:H, 7p7c:H, 7p7l:H, 7p7m:H, 7z80:H
11 8b9z:H 315 297 0.4105 0.4222 0.4478 2.25e-79 8esz:1
12 6l7o:A 371 326 0.4012 0.3504 0.3988 4.18e-69 6l7p:A
13 7z0s:D 306 231 0.2222 0.2353 0.3117 8.61e-13
14 6rms:A 397 83 0.0833 0.0680 0.3253 3.9
15 8r34:A 485 49 0.0432 0.0289 0.2857 9.0 8r34:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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