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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
YHQPRVPSSAIPIPNVSGRVPLPDSTPVPEDFKIEIPSYPYGPRRVYHQSNTGLYGSALIRFGNNVSKRNEIKTRRKWRP
NVQQKRLWSKSLGVFVRTRVTTRVLRTIDKVGGLDEYLLGHKAARVKELGPWGWMLRWRIMQTPEIRERFAKEREALGLP
PREKSLEEQLREFQVAGIQ

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ywe:S 179 179 1.0000 1.0000 1.0000 2.97e-130 6yws:S, 6ywv:S, 6ywx:S, 6ywy:S
2 5mrc:S 185 108 0.2961 0.2865 0.4907 2.60e-34 3j6b:S, 5mre:S, 5mrf:S
3 6xyw:Ax 99 67 0.1955 0.3535 0.5224 2.76e-18
4 8rd8:WD 76 61 0.1564 0.3684 0.4590 1.87e-09 8rdv:WD, 8rdw:WD
5 7uvx:W 78 50 0.1397 0.3205 0.5000 1.53e-08 7m4v:W, 7m4w:W, 7m4x:W, 7m4y:W, 7m4z:W, 7ryf:W, 7ryg:W, 7ryh:W, 7uvv:W, 7uvw:W, 7uvy:W, 7uvz:W, 7uw1:W, 6v39:W, 6v3a:W, 6v3b:W, 6v3d:W, 6yhs:T, 6ysi:T
6 6z1p:AB 264 72 0.1620 0.1098 0.4028 6.75e-08
7 8cd1:X 77 50 0.1341 0.3117 0.4800 2.24e-07 6spb:X, 6spd:X, 6spf:X, 6spg:X, 7unr:Z, 7unu:Z, 7unv:Z, 7unw:Z
8 7pkt:v 120 69 0.1453 0.2167 0.3768 3.02e-05
9 5aj4:B1 244 73 0.1229 0.0902 0.3014 1.22e-04 4ce4:1, 6gaw:B1, 6gb2:B1, 7nqh:B1, 7nql:B1, 7nsh:B1, 7nsi:B1, 7nsj:B1, 8oin:BE, 8oiq:BE, 4v19:1, 6ydp:B1, 6ydw:B1
10 6dzi:y 77 51 0.1117 0.2597 0.3922 2.39e-04 6dzp:y, 8fr8:y
11 8any:X 244 73 0.1229 0.0902 0.3014 7.29e-04 7a5f:X3, 7a5g:X3, 7a5h:X, 7a5i:X3, 7a5j:X, 7a5k:X3, 6i9r:X, 3j7y:X, 3j9m:X, 8k2a:Lb, 8k2b:Lb, 7l08:X, 7l20:X, 6nu2:X, 6nu3:X, 7o9k:X, 7o9m:X, 7odr:X, 7ods:X, 7odt:X, 7of0:X, 7of2:X, 7of3:X, 7of4:X, 7of5:X, 7of6:X, 7of7:X, 7og4:XX, 7oi6:X, 7oi7:X, 7oi8:X, 7oi9:X, 7oia:X, 7oib:X, 7oic:X, 7oid:X, 7oie:X, 8oir:BE, 8oit:BE, 5ool:X, 5oom:X, 7pd3:X, 8pk0:X, 7po4:X, 7qh6:X, 7qh7:X, 7qi4:X, 7qi5:X, 7qi6:X, 8qsj:X, 8qu1:X, 8qu5:X, 6vlz:X, 6vmi:X, 8xt0:Lb, 8xt1:Lb, 8xt2:Lb, 8xt3:Lb, 6zm5:X, 6zm6:X, 6zs9:XX, 6zsa:XX, 6zsb:XX, 6zsc:XX, 6zsd:XX, 6zse:XX, 6zsg:XX
12 8fmw:AZ 91 69 0.1229 0.2418 0.3188 0.001 8fn2:Z
13 5mmi:Y 77 53 0.1285 0.2987 0.4340 0.002 6eri:AX, 5h1s:Y, 5mlc:Y, 5mmm:Y, 5x8p:Y, 5x8t:Y
14 8a3l:w 77 45 0.1006 0.2338 0.4000 0.004 7abz:X, 7ac7:X, 7acj:X, 7acr:X, 5ady:X, 5afi:X, 8akn:w, 8am9:w, 8ana:w, 8ap4:w, 9ax7:w, 9ax8:1, 8aye:w, 8b0x:w, 7b5k:X, 8b7y:f, 8bf7:U, 8bge:U, 8bgh:U, 8bh4:U, 8bhj:U, 8bhl:U, 8bhn:U, 8bhp:U, 8bil:U, 8bim:U, 7bl2:X, 7bl3:X, 7bl4:X, 7bl5:X, 7bl6:X, 6bu8:26, 7bv8:Y, 6by1:CX, 6by1:DX, 6c4i:Y, 8c8x:X, 8c8y:X, 8c8z:X, 8cam:w, 8ceu:w, 8cgd:w, 8cgk:w, 8cgv:w, 9cg5:w, 9cg6:w, 9cg7:w, 7cpj:X, 4csu:0, 7d6z:X, 7d80:v, 6dnc:BA, 8eiu:w, 8ekc:Z, 8emm:w, 6enf:X, 6enj:X, 6enu:X, 9fbv:w, 8fiz:DE, 8fto:w, 8fzd:Z, 8fze:Z, 8fzf:Z, 8fzg:Z, 8fzh:Z, 8fzi:Z, 8fzj:Z, 8g2u:X, 8g31:X, 8g34:X, 8g38:X, 8g6w:w, 8g6x:w, 8g6y:w, 8g7p:Z, 8g7q:Z, 8g7r:Z, 8g7s:Z, 5gad:Y, 5gae:Y, 5gaf:Y, 5gag:Y, 5gah:Y, 6gbz:X, 6gc0:X, 6gc4:X, 6gc8:X, 6gwt:X, 6gxm:X, 6gxn:X, 6gxo:X, 6gxp:X, 6h4n:X, 5h5u:Y, 6h58:X, 6h58:XX, 6hrm:X, 8hsp:w, 8htz:w, 8hu1:w, 6i0y:X, 6i7v:DY, 6i7v:CY, 8ifb:w, 8ifc:w, 5iqr:X, 5it8:CY, 5it8:DY, 8j1z:w, 3j5l:X, 5j5b:CY, 5j5b:DY, 3j7z:X, 5j7l:CY, 5j7l:DY, 3j8g:0, 5j88:CY, 5j88:DY, 5j8a:CY, 5j8a:DY, 3j9y:X, 3j9z:LV, 5j91:CY, 5j91:DY, 3ja1:LZ, 3jbu:0, 3jbv:0, 3jcd:X, 3jce:X, 3jcj:W, 3jcn:X, 5jc9:CY, 5jc9:DY, 7jss:x, 7jsw:x, 7jsz:x, 5jte:BX, 7jt1:x, 7jt2:x, 7jt3:x, 5ju8:BX, 7k00:w, 7k50:x, 7k51:x, 7k52:x, 7k53:x, 7k54:x, 7k55:x, 5kcr:11, 5kcs:11, 5kps:X, 5kpv:W, 5kpw:W, 5kpx:W, 5l3p:1, 6lkq:f, 7lv0:x, 7lvk:f, 5lza:X, 5lzb:X, 5lzc:X, 5lzd:X, 5lze:X, 5lzf:X, 7m5d:X, 5mdv:X, 5mdw:X, 5mdy:X, 5mdz:X, 5mgp:X, 7n1p:Lb, 7n2c:Lb, 7n2u:Lb, 7n2v:Lb, 7n30:Lb, 7n31:Lb, 7nbu:w, 5nco:Y, 5np6:v, 7nso:X, 7nsp:X, 7nsq:X, 5nwy:k, 7nwt:X, 7nww:W, 7o19:BX, 7o1a:BX, 7o1c:BX, 5o2r:X, 6o9k:1, 6ofx:x, 6og7:x, 6ogf:x, 6ogg:x, 6ogi:x, 7oif:W, 7oig:W, 7oii:W, 7oiz:w, 7oj0:w, 6om6:X, 6ore:X, 6orl:X, 6osk:X, 6osq:X, 6ost:X, 6ot3:X, 7ot5:W, 7otc:X, 6ouo:X, 8p16:X, 8p17:X, 8p18:X, 7p3k:w, 8peg:1, 8phj:w, 6pj6:f, 7pjs:X, 7pjt:X, 7pju:X, 7pjv:X, 7pjw:X, 7pjx:X, 7pjy:X, 7pjz:X, 8pkl:1, 8pva:w, 7q4k:BX, 8q4f:w, 6q97:X, 6q98:X, 6q9a:X, 8qbt:X, 6qdw:0, 7qg8:k, 7qgh:k, 7qgn:k, 7qgr:k, 8qk7:X, 8qoa:w, 7qq3:f, 6qul:Y, 8r3v:12, 8r6c:w, 8r8m:w, 8rcl:12, 8rcm:12, 8rcs:12, 8rct:12, 8rpy:X, 8rpz:X, 8rq0:X, 8rq2:X, 6s0k:Y, 7s1g:f, 7s1h:f, 7s1i:f, 7s1j:f, 7s1k:f, 7sa4:X, 7ss9:x, 7ssd:x, 7ssl:x, 7ssn:x, 7sso:x, 7ssw:x, 7st2:x, 7st6:x, 7st7:x, 8syl:Z, 6szs:X, 8t5d:X, 8t5h:X, 6tbv:L281, 6tc3:L281, 7tos:L28, 4u1u:BX, 4u1u:DX, 4u1v:BX, 4u1v:DX, 4u20:BX, 4u20:DX, 4u24:BX, 4u24:DX, 4u25:BX, 4u25:DX, 4u26:BX, 4u26:DX, 4u27:BX, 4u27:DX, 5u4i:Y, 6u48:CY, 5u9f:26, 5u9g:26, 7ug7:Lb, 7uph:w, 8upo:c, 8upr:c, 8uql:c, 8uqm:c, 8uqp:c, 8ur0:c, 8urh:c, 8uri:c, 8urx:c, 8ury:c, 4uy8:X, 5uyk:26, 5uyl:26, 5uym:26, 5uyn:26, 5uyp:26, 5uyq:26, 4v50:BX, 4v50:DX, 4v52:BZ, 4v52:DZ, 4v53:BZ, 4v53:DZ, 4v54:BZ, 4v54:DZ, 4v55:BZ, 4v55:DZ, 4v56:BZ, 4v56:DZ, 4v57:BZ, 4v57:DZ, 4v5h:B0, 4v5y:BZ, 4v5y:DZ, 4v64:BZ, 4v64:DZ, 4v69:BX, 4v6c:BX, 4v6c:DX, 4v6d:BX, 4v6d:DX, 4v6e:BX, 4v6e:DX, 4v6k:AY, 4v6l:BY, 4v6m:BX, 4v6n:AZ, 4v6o:BZ, 4v6p:BZ, 4v6q:BZ, 4v6r:BZ, 4v6s:AZ, 4v6t:BX, 4v6v:B1, 4v6y:BX, 4v6z:BX, 4v70:BX, 4v71:BX, 4v72:BX, 4v73:BX, 4v74:BX, 4v75:BX, 4v76:BX, 4v77:BX, 4v78:BX, 4v79:BX, 4v7a:BX, 4v7b:BX, 4v7c:BZ, 4v7d:A1, 4v7i:AX, 4v7s:BX, 4v7s:DX, 4v7t:BX, 4v7t:DX, 4v7u:BX, 4v7u:DX, 4v7v:BX, 4v7v:DX, 4v85:B1, 4v89:B1, 4v9c:BX, 4v9c:DX, 4v9d:CX, 4v9d:DX, 4v9o:AX, 4v9o:CX, 4v9o:EX, 4v9o:GX, 4v9p:AX, 4v9p:CX, 4v9p:EX, 4v9p:GX, 8vs9:L28, 8vsa:L28, 6vu3:c, 6vwl:V, 6vwm:V, 6vwn:V, 6vyq:c, 6vyr:c, 6vys:c, 6vyt:c, 6vyu:c, 6vyw:c, 6vyx:c, 6vyy:c, 6vyz:c, 6vz2:c, 6vz3:c, 6vz5:c, 6vz7:c, 6vzj:c, 8w51:Y, 5wdt:X, 6wd0:x, 6wd1:x, 6wd2:x, 6wd3:x, 6wd4:x, 6wd5:x, 6wd6:x, 6wd7:x, 6wd8:x, 6wd9:x, 6wda:x, 6wdb:x, 6wdc:x, 6wdd:x, 6wde:x, 6wdf:x, 6wdg:x, 6wdh:x, 6wdi:x, 6wdj:x, 6wdk:x, 6wdl:x, 6wdm:x, 5we4:X, 5we6:X, 4wf1:BX, 4wf1:DX, 5wf0:X, 5wfk:X, 5wfs:X, 6wnt:x, 6wnv:x, 6wnw:x, 4woi:BX, 4woi:CX, 4www:RX, 4www:YX, 6x6t:c, 6x7f:c, 6x7k:c, 6x9q:c, 6xdq:c, 6xdr:c, 6xgf:c, 6xii:c, 6xij:c, 6xz7:X, 6xza:X2, 6xzb:X2, 6y69:X, 7y7c:w, 7y7d:w, 7y7e:w, 7y7f:w, 7y7g:w, 7y7h:w, 4ybb:CY, 4ybb:DY, 7yla:f, 6ys3:0, 6ysr:X, 6yss:X, 6yst:X, 6ysu:X, 7z20:0, 7zod:0, 7zp8:0, 7zq5:0, 7zq6:0, 6ztj:BY, 6ztl:BY, 6ztm:BY, 6ztn:BY, 6zto:BY, 6ztp:BY, 7zta:L281, 6zu1:BY
15 4v61:BY 76 53 0.1117 0.2632 0.3774 0.017
16 8a22:Av 129 56 0.1061 0.1473 0.3393 0.068 8apn:Av, 8apo:Av
17 7ood:v 63 49 0.1173 0.3333 0.4286 0.093 7p6z:v, 7pah:v, 7pai:v, 7paj:v, 7pak:v, 7pal:v, 7pam:v, 7pan:v, 7pao:v, 7paq:v, 7par:v, 7pas:v, 7pat:v, 7pau:v, 7ph9:v, 7pha:v, 7phb:v, 7phc:v, 7pi8:v, 7pi9:v, 7pia:v, 7pib:v, 7pic:v, 7pio:v, 7pip:v, 7piq:v, 7pir:v, 7pis:v, 7pit:v
18 6dcf:D 1176 47 0.1006 0.0153 0.3830 2.0 6vvv:D
19 6vvt:D 1200 47 0.1006 0.0150 0.3830 2.0
20 6z11:D 1254 47 0.1006 0.0144 0.3830 2.3 6ccv:D, 6eyd:D, 6f6w:D, 5tw1:D, 5vi5:D, 5vi8:D, 6vvs:D
21 9c4g:w 60 48 0.1061 0.3167 0.3958 2.4 8crx:w, 8cvm:w
22 6cce:D 1195 47 0.1006 0.0151 0.3830 2.4
23 1k0e:A 437 108 0.1564 0.0641 0.2593 3.2 1k0g:A
24 1c7n:A 394 22 0.0670 0.0305 0.5455 5.5 1c7n:B, 1c7n:C, 1c7n:D, 1c7n:E, 1c7n:F, 1c7n:G, 1c7n:H, 1c7o:A, 1c7o:B, 1c7o:C, 1c7o:D, 1c7o:E, 1c7o:F, 1c7o:G, 1c7o:H
25 7jil:X 76 50 0.1006 0.2368 0.3600 6.3
26 8ej3:D 1281 40 0.0894 0.0125 0.4000 6.8 6bzo:D, 6c04:D, 6c05:D, 6c06:D, 6dv9:D, 6dvb:D, 6dvc:D, 6dvd:D, 6dve:D, 8e74:D, 8e79:D, 8e82:D, 8e8m:D, 8e95:D, 6edt:D, 6ee8:D, 6eec:D, 8ehq:D, 8eoe:D, 8eof:D, 8eos:D, 8eot:D, 8exy:D, 6fbv:D, 8hih:D, 6jcx:D, 6jcy:D, 7kif:D, 7kim:D, 7kin:D, 6kon:D, 6koo:D, 6kop:D, 6koq:D, 6m7j:D, 7p5x:AD, 7pp4:d, 8q3i:D, 7q4u:D, 7q4u:J, 7q4u:P, 7q4u:W, 7q4u:CA, 7q4u:IA, 7q4u:OA, 7q4u:UA, 7q59:D, 7q59:d, 7rwi:D, 6tye:D, 6tyf:D, 6tyg:D, 7u22:D, 5uh5:D, 5uh6:D, 5uh8:D, 5uh9:D, 5uha:D, 5uhb:D, 5uhc:D, 5uhd:D, 5uhe:D, 5uhf:D, 5uhg:D, 6vvx:D, 6vvy:D, 6vvz:D, 6vw0:D, 6yxu:D, 6yys:D, 7z8q:d, 7zf2:D, 5zx2:D, 5zx3:D
27 8z9h:B 676 75 0.0894 0.0237 0.2133 8.7 8p0b:B, 8p0g:B, 8p0u:B, 8z85:B, 8z8j:B, 8z8n:B, 8z97:B, 8z9h:I, 8z9r:B, 8z9r:I
28 8z98:B 647 75 0.0894 0.0247 0.2133 9.2 8z9q:B
29 8z8x:B 710 75 0.0894 0.0225 0.2133 9.2 8z90:B
30 1o6e:B 232 51 0.0894 0.0690 0.3137 9.9 1o6e:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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