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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKL
LNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPL
PAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVN
LTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFL
GFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTY
AKGFTIIIEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCL
CPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRNKLLFIE
TQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIREND
FLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHR
EDQLGLSLLSLE

The query sequence (length=732) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8byq:1 760 732 1.0000 0.9632 1.0000 0.0 8bvw:1, 8ebs:B, 8ebv:B, 8ebw:B, 7egb:7, 7egc:7, 7ena:7, 7enc:7, 8gxq:HA, 8gxs:HA, 7lbm:X, 6nmi:B, 7nvr:0, 7nvw:0, 7nvx:0, 7nvy:0, 7nvz:0, 7nw0:0, 6o9l:0, 6o9m:0, 5of4:B, 8wak:7, 8wal:7, 8wan:7, 8wao:7, 8wap:7, 8waq:7, 8war:7, 8was:7
2 8ebt:B 677 720 0.9030 0.9764 0.9181 0.0 7ad8:B, 8ebu:B, 8ebx:B, 8eby:B, 6ro4:B
3 7k01:0 754 734 0.5328 0.5172 0.5313 0.0 8cen:0, 8ceo:0, 6gym:0, 7k04:0, 7m2u:0, 7ml0:0, 7ml1:0, 7ml2:0, 7ml3:0, 7ml4:0, 7o4i:0, 7o4j:0, 7o4k:0, 7o4l:0, 7o72:0, 7o73:0, 7o75:0, 5oqj:0, 5oqm:0, 7zs9:0, 7zsa:0, 7zsb:0
4 8rev:A 709 731 0.5082 0.5247 0.5089 0.0
5 4a15:A 596 241 0.0847 0.1040 0.2573 1.42e-10 5h8w:A, 2vsf:A
6 3crw:1 485 191 0.0669 0.1010 0.2565 2.96e-06
7 3crw:1 485 120 0.0451 0.0680 0.2750 0.61
8 3crv:A 551 191 0.0669 0.0889 0.2565 3.03e-06 5h8c:A
9 3crv:A 551 138 0.0533 0.0708 0.2826 2.65e-04 5h8c:A
10 7tra:A 572 98 0.0410 0.0524 0.3061 0.012
11 6fwr:A 699 230 0.0724 0.0758 0.2304 0.053 6fws:A, 6fws:B
12 6fwr:A 699 111 0.0396 0.0415 0.2613 3.5 6fws:A, 6fws:B
13 3ziu:A 621 79 0.0273 0.0322 0.2532 0.51 3ziu:B
14 4paw:A 197 65 0.0314 0.1168 0.3538 1.2 4paw:B
15 8i4y:A 1687 84 0.0410 0.0178 0.3571 2.4 8i4y:B, 8i4z:A
16 3vkh:B 2908 39 0.0219 0.0055 0.4103 5.2
17 3vkg:B 2853 39 0.0219 0.0056 0.4103 5.3
18 3vkg:A 2954 39 0.0219 0.0054 0.4103 5.3
19 5og1:A 819 285 0.0956 0.0855 0.2456 5.4 5ofo:C, 5ofo:F, 5ofo:E, 5ofo:D, 5ofo:B, 5ofo:A, 5og1:E, 6rn2:A, 6rn2:B, 6rn2:C, 6rn2:D, 6rn2:F, 6rn2:E, 6rn3:A, 6rn3:B, 6rn3:C, 6rn3:D, 6rn3:E, 6rn4:B, 6rn4:C, 6rn4:D, 6rn4:E
20 3vkh:A 3042 39 0.0219 0.0053 0.4103 5.6
21 7z8f:e 4579 43 0.0246 0.0039 0.4186 7.9 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
22 8ptk:f 4502 43 0.0246 0.0040 0.4186 8.2 8ptk:e
23 7z8g:A 3047 43 0.0246 0.0059 0.4186 8.6 8fdu:A, 7z8l:f
24 5nug:A 2920 43 0.0246 0.0062 0.4186 8.6 5nug:B
25 8pqw:A 2892 43 0.0246 0.0062 0.4186 8.8 8pqy:A, 8pqz:A, 8pqz:J
26 8dyu:A 2562 43 0.0246 0.0070 0.4186 8.9 8dyv:A
27 8fcy:A 2864 43 0.0246 0.0063 0.4186 9.1 8fd6:A, 8fdt:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218