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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YFLWPTSNLQHCAAEGRANYFGNLQPKGQQANSLLDLMTIRAFHSKILRRFSLGTAVGFRIRKGDLTDIPAILVFVARKV
HKKWLNPAQCLPAILEGPGGVWCDVDVVEFSYQMFSELVDKLCGSDECIGSGSQVASHETFGTLGAIVKRRTGNKQVGFL
TNRHVAVDLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDVWYGIYAGTNPETFVRADGAFIPFADDFDISTVTTVV
RGVGDIGDVKVIDLQCPLNSLIGRQVCKVGRSSGHTTGTVMAYALEYNDEKGICFFTDILVVGENRQTFDLEGDSGSLII
LTSQDGEKPRPIGIIWGGTANRGRLKLTSDHGPENWTSGVDLGRLLDRLELDIIITNESLQDAVQQQ

The query sequence (length=387) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8pmi:B 409 408 1.0000 0.9462 0.9485 0.0 8has:A, 8has:B, 8has:C, 8has:D, 8has:E, 8has:F, 8hau:A, 8hau:B, 8hau:C, 8hau:D, 8hau:E, 8hau:F, 8pme:A, 8pmg:A, 8pmg:B, 8pmg:C, 8pmg:D, 8pmg:E, 8pmg:F, 8pmi:A, 8pmi:C, 8pmi:D, 8pmi:E, 8pmi:F, 8pml:A, 8pml:B, 8pml:C, 8pml:D, 8pml:E, 8pml:F, 8pmm:A, 8pmm:B, 8pmm:C, 8pn1:A, 8pn1:B, 8pn1:C, 8pn1:D, 8pn1:E, 8pn1:F, 8pn2:A, 8pn2:B, 8pn2:C, 8pn2:D, 8pn2:E, 8pn2:F, 7y77:A, 7y77:B, 7y77:C
2 8pme:C 343 360 0.8837 0.9971 0.9500 0.0 8pme:B
3 2iw0:A 226 33 0.0388 0.0664 0.4545 0.40
4 4od5:A 274 40 0.0413 0.0584 0.4000 0.96 4od5:B, 4od5:C, 4od5:D, 4od5:E
5 5ypz:A 480 80 0.0517 0.0417 0.2500 1.1 5ypz:C, 5ypz:B
6 7tom:A 498 87 0.0672 0.0522 0.2989 3.2 7tol:A
7 5bsm:A 530 66 0.0517 0.0377 0.3030 8.1 5bsm:B, 5bsr:A, 5bst:A, 5bsu:A, 5bsv:A, 5bsw:A, 5bsw:B, 5u95:D, 5u95:B, 5u95:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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