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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
YDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLFSVYMCYEFVMSGWGI
GYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFH
ALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFACIIMSYSFMFLLLF
LHFWYRAYTKGQRLPK

The query sequence (length=256) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6y7f:B 256 256 1.0000 1.0000 1.0000 0.0 6y7f:A
2 8fkv:NI 647 36 0.0430 0.0170 0.3056 1.8 8fkt:NI, 8fku:NI, 8fkw:NI, 8fkx:NI, 8fky:NI
3 8goa:A 367 115 0.1133 0.0790 0.2522 2.0 8goa:B, 8goa:C, 8goa:D, 8gob:A, 8gob:B, 8x6m:A, 8x6m:B, 5zxl:A, 5zxl:B, 5zxl:C, 5zxl:D
4 5u8t:2 583 41 0.0625 0.0274 0.3902 3.5
5 7zgm:A 702 52 0.0703 0.0256 0.3462 4.0
6 6kmx:aA 717 119 0.1133 0.0404 0.2437 5.7 6kmx:bA, 6kmx:cA
7 8k1g:A 367 61 0.0664 0.0463 0.2787 7.2 8k1h:A
8 3bxu:A 71 26 0.0508 0.1831 0.5000 10.0 3bxu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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