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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YADLAIQGTNNSSIASKRSVELLYLPKLSSANNFQMDKNNKLLEYFKFFVPKKIKRSPCINRGYWLRLFAIRSRLNSIIE
QTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSNVDFLTTPKY
LARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKMENSHFIILEQLIPKGPFEPFSKQML
AHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMFQLWESADEATKKELLKVEPFDELEEFHLFCHHYVLCHATN
YKEFAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIE
VSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVT
EGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKL
QHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHI
IGGGATCYGFGSVTNVGLKLIAIA

The query sequence (length=664) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2zwa:B 683 669 0.9925 0.9649 0.9851 0.0 2zw9:A, 2zw9:B, 2zwa:A
2 3p71:T 315 285 0.1145 0.2413 0.2667 1.38e-21 3iei:A, 3iei:B, 3iei:C, 3iei:D, 3iei:E, 3iei:F, 3iei:G, 3iei:H
3 1rjd:C 333 339 0.1340 0.2673 0.2625 2.23e-19 2ob2:A, 2ob2:B, 2ob2:C, 1rjd:A, 1rjd:B, 1rje:A, 1rje:B, 1rje:C
4 3o7w:A 282 285 0.1084 0.2553 0.2526 3.60e-16
5 1rjg:A 291 324 0.1205 0.2749 0.2469 2.80e-12
6 8ebl:A 335 132 0.0557 0.1104 0.2803 3.69e-07 6do3:A, 6do3:B, 6do4:B, 6do4:A, 6do5:B, 6do5:A, 8ebl:B, 8ebm:A, 8ebm:B, 8pif:A, 8pif:B, 8sge:A, 8sge:B, 8sgf:B, 8sgf:A, 8uxs:A, 8uxs:B
7 3ing:A 319 83 0.0346 0.0721 0.2771 0.17
8 4nen:A 1063 204 0.0617 0.0386 0.2010 0.79
9 4neh:A 1084 204 0.0617 0.0378 0.2010 0.99 5es4:A, 3k6s:A, 3k71:G
10 6ryx:A 626 123 0.0467 0.0495 0.2520 1.3 6ryv:A, 6ryw:A
11 6ryx:A 626 63 0.0241 0.0256 0.2540 7.1 6ryv:A, 6ryw:A
12 5a29:A 548 80 0.0392 0.0474 0.3250 1.8
13 8zc9:A 1000 156 0.0557 0.0370 0.2372 2.6 8wyc:C, 8wyc:D, 8wyf:C, 8wyf:D, 8ylt:A, 8ylt:B, 8ylt:C, 8ylt:D, 8zc9:D
14 8zc9:B 971 156 0.0557 0.0381 0.2372 2.6 8wyb:A, 8wyb:B, 8wyb:C, 8wyb:D, 8wyc:A, 8wyc:B, 8wyf:A, 8wyf:B, 8zc9:E
15 8bx8:C 3947 112 0.0377 0.0063 0.2232 2.9 7k58:C, 7k5b:C, 7kek:C
16 6ttk:D 286 58 0.0271 0.0629 0.3103 3.5 8oio:B, 8oio:C, 8oio:D, 8oio:A, 6ttk:B, 6ttk:C, 6ttk:A, 6v7o:A, 6v7o:B
17 3qdl:A 178 50 0.0241 0.0899 0.3200 3.8 3qdl:B, 3qdl:C, 3qdl:D
18 8jsz:A 259 49 0.0301 0.0772 0.4082 4.4 8jsz:B
19 7rhq:A 974 121 0.0467 0.0318 0.2562 4.9 7rhr:A
20 7bvy:A 333 173 0.0617 0.1231 0.2370 5.5 7bvz:A
21 5c92:A 481 70 0.0226 0.0312 0.2143 7.6
22 3tw1:A 222 58 0.0271 0.0811 0.3103 8.8
23 1dd1:B 249 57 0.0286 0.0763 0.3333 9.7 1dd1:A, 1dd1:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218