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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
YAALIADWPVVVLGMCTMFIVVCALVGVLVPELPDFSDPLLGFEPRGTAIGQRLVTWNNMVKNTGYKATLANYPFKYADE
QAKSHNFHKDSFFCDVPSDRYSRVVFTSSGGETLWNLPAIKSMCNVDNSRIRSHPQFGDLCQRTTAASCCPSWTLGNYIA
ILNNRSSCQKIVERDVSHTLKLLRTCAKHYDMAARRKDQLKCTNVPRKCTKYNAVYQILHYLVDKDFMTPKTADYATPAL
KYSMLFSPTEKGESMMNIYLDNFENWNSSDGVTTITGIEFGIKHSLFQDYLLMDTVYPAIAIVIVLLVMCVYTKSMFITL
MTMFAIISSLIVSYFLYRVVFHFEFFPFMNLTALIILVGIGANNAFVLCDVWNYTKFDKPHAETSETVSITLQHAALSMF
VTSFTTAAAFYANYVSNITAIRCFGVYAGTAILVNYVLMVTWLPAVVVLHERACQKCHKVLFAISEASRIFFEKVLPCIV
IKFRYLWLFWFLALTVGGAYIVCINPKMKLPSLELSEFQVFRSSHPFERYDAEYKKLFMFERVHHGEELHMPITVIWGVS
PEDNGNPLNPKSKGKLTLDSSFNIASPASQAWILHFCQKLRNQTFFYQTDEQDFTSCFIETFKQWMENQDCCCSHWSFPY
KQEIFELCIKRAIMELERSTGYHLDSKTPGPRFDINDTIRAVVLEFQSTYLFTLAYEKMHQFYKEVDSWISSELSSAPEG
LSNGWFVSNLEFYDLQDSLSDGTLIAMGLSVAVAFSVMLLTTWNIIISLYAIISIAGTIFVTVGSLVLLGWELNVLESVT
ISVAVGLSVNFAVHYGVAYRLAPDPDREGKVIFSLSRVGSAMAMAALTTFVAGAMMMPSTVLAYTQLGTFMMLIMCISWA
FATFFFQCMCRCLGPQGTCGQIPLPKK

The query sequence (length=907) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7e2i:D 907 907 1.0000 1.0000 1.0000 0.0 7e2g:D, 7e2h:E
2 7rpk:A 953 947 0.9294 0.8846 0.8902 0.0 7rph:A, 7rpi:A, 7rpj:A
3 6xe6:A 826 904 0.9030 0.9915 0.9060 0.0
4 6tbu:A 842 902 0.3594 0.3872 0.3614 0.0
5 6v3f:A 1234 540 0.1191 0.0875 0.2000 3.82e-08 6v3h:A
6 6w5r:A 1194 115 0.0331 0.0251 0.2609 2.12e-06 3gki:A, 3gkj:A, 6w5s:A, 6w5t:A, 6w5u:A, 6w5v:A
7 6w5r:A 1194 178 0.0441 0.0335 0.2247 0.044 3gki:A, 3gkj:A, 6w5s:A, 6w5t:A, 6w5u:A, 6w5v:A
8 6uox:A 1161 205 0.0485 0.0379 0.2146 6.04e-06
9 6uox:A 1161 178 0.0441 0.0345 0.2247 0.046
10 8qec:A 1101 144 0.0452 0.0372 0.2847 2.16e-04 9f40:A, 9f40:D, 9f40:B, 9f40:C, 9f41:C, 9f41:D, 9f41:A, 9f41:B, 8qeb:A, 8qed:A, 8qee:A, 6r4l:A
11 8qec:A 1101 133 0.0276 0.0227 0.1880 0.053 9f40:A, 9f40:D, 9f40:B, 9f40:C, 9f41:C, 9f41:D, 9f41:A, 9f41:B, 8qeb:A, 8qed:A, 8qee:A, 6r4l:A
12 3jd8:A 1133 82 0.0254 0.0203 0.2805 3.21e-04
13 3jd8:A 1133 178 0.0441 0.0353 0.2247 0.047
14 6rmg:A 1026 104 0.0254 0.0224 0.2212 0.048 6dmb:A, 6dmy:A, 7k65:A, 6mg8:A, 6n7g:A, 6n7g:B, 6n7g:D, 6n7g:E, 6n7h:A, 6n7h:B, 6n7k:A, 6n7k:B, 6n7k:D, 6n7k:E, 6rtw:A, 6rvd:A, 6rvd:B, 7v6y:A, 7v6z:A
15 6rmg:A 1026 107 0.0287 0.0253 0.2430 0.15 6dmb:A, 6dmy:A, 7k65:A, 6mg8:A, 6n7g:A, 6n7g:B, 6n7g:D, 6n7g:E, 6n7h:A, 6n7h:B, 6n7k:A, 6n7k:B, 6n7k:D, 6n7k:E, 6rtw:A, 6rvd:A, 6rvd:B, 7v6y:A, 7v6z:A
16 7rhq:A 974 104 0.0254 0.0236 0.2212 0.048 7rhr:A
17 7rhq:A 974 180 0.0452 0.0421 0.2278 0.11 7rhr:A
18 7dfz:A 897 127 0.0331 0.0334 0.2362 0.48
19 7dfw:A 957 127 0.0331 0.0313 0.2362 0.49 7n4u:A, 7n4u:B, 7n4v:A, 7n4v:B, 7n4x:A
20 7df8:A 918 127 0.0331 0.0327 0.2362 0.65
21 6ks6:g 520 49 0.0198 0.0346 0.3673 3.4 6ks6:G, 4v81:C, 4v81:k, 4v8r:AG, 4v8r:Ag, 4v8r:BG, 4v8r:Bg, 4v94:C, 4v94:K, 4v94:c, 4v94:k, 7ylw:G, 7ylw:g, 7ylx:G, 7ylx:g, 7yly:G, 7yly:g
22 6yw5:44 260 45 0.0187 0.0654 0.3778 3.4 6ywe:44, 6ywx:44, 6ywy:44

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218