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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
WSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWVNA
NSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVA
SVTDVVDSRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDNFCWEKYLEETGASAVPTWAFKVRP
PHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDFWIDADHPDIHPAGWCSKTGHPLQPPLGP

The query sequence (length=315) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2rhu:A 325 314 0.9968 0.9662 1.0000 0.0 6byb:A, 3oq5:A, 3oq5:C, 3p8h:A, 3p8h:B, 2pqw:A, 2rhi:A, 2rhx:A, 2rhy:A, 2rje:A, 2rje:B, 2rjf:A, 2rjf:C, 3uwn:A
2 2rhu:A 325 104 0.1429 0.1385 0.4327 1.34e-22 6byb:A, 3oq5:A, 3oq5:C, 3p8h:A, 3p8h:B, 2pqw:A, 2rhi:A, 2rhx:A, 2rhy:A, 2rje:A, 2rje:B, 2rjf:A, 2rjf:C, 3uwn:A
3 3ut1:A 313 314 0.6571 0.6613 0.6592 1.12e-163 4fl6:A, 4fl6:B, 4l59:A
4 3f70:B 410 315 0.3651 0.2805 0.3651 3.74e-53
5 3f70:B 410 326 0.3238 0.2488 0.3129 8.83e-34
6 3f70:B 410 101 0.1429 0.1098 0.4455 1.49e-20
7 2vyt:A 214 208 0.2889 0.4252 0.4375 7.55e-53 4edu:A
8 2vyt:A 214 213 0.2857 0.4206 0.4225 3.89e-50 4edu:A
9 2vyt:A 214 103 0.1429 0.2103 0.4369 1.40e-21 4edu:A
10 3f70:A 392 314 0.3619 0.2908 0.3631 8.90e-53
11 3f70:A 392 320 0.3016 0.2423 0.2969 5.50e-28
12 3f70:A 392 101 0.1429 0.1148 0.4455 1.49e-20
13 3f70:A 392 215 0.1968 0.1582 0.2884 1.30e-18
14 3f70:A 392 106 0.1016 0.0816 0.3019 1.90e-07
15 4c5i:A 423 325 0.3937 0.2931 0.3815 2.47e-51
16 4c5i:A 423 330 0.3143 0.2340 0.3000 6.16e-29
17 4c5i:A 423 101 0.1365 0.1017 0.4257 1.13e-20
18 4c5i:A 423 220 0.2159 0.1608 0.3091 1.15e-18
19 4c5i:A 423 107 0.0952 0.0709 0.2804 9.56e-07
20 3h6z:A 431 292 0.3302 0.2413 0.3562 1.18e-49 4c5h:A, 3h6z:B
21 3h6z:A 431 332 0.3111 0.2274 0.2952 5.87e-33 4c5h:A, 3h6z:B
22 3h6z:A 431 183 0.2413 0.1763 0.4153 4.29e-32 4c5h:A, 3h6z:B
23 3h6z:A 431 101 0.1238 0.0905 0.3861 3.61e-16 4c5h:A, 3h6z:B
24 2r58:A 212 210 0.2762 0.4104 0.4143 3.50e-46 2r5a:A, 2r5m:A
25 2r58:A 212 210 0.2540 0.3774 0.3810 1.24e-43 2r5a:A, 2r5m:A
26 2r58:A 212 101 0.1397 0.2075 0.4356 1.72e-18 2r5a:A, 2r5m:A
27 2vyt:B 183 210 0.2603 0.4481 0.3905 2.56e-40
28 2vyt:B 183 206 0.2508 0.4317 0.3835 8.33e-39
29 6l1p:C 70 67 0.0667 0.3000 0.3134 3.04e-05 6l1f:B, 6l1p:B, 6l1p:A, 6l1p:D
30 6l1p:C 70 60 0.0635 0.2857 0.3333 5.97e-04 6l1f:B, 6l1p:B, 6l1p:A, 6l1p:D
31 4v6x:CQ 188 48 0.0508 0.0851 0.3333 1.1 7a01:S2, 8a3d:K, 5aj0:AQ, 8b5l:Q, 8b6c:Q, 9bdl:AL18, 9bdn:AL18, 9bdp:AL18, 7bhp:LQ, 8bhf:D1, 8bpo:P2, 8btk:BQ, 7cpu:LQ, 7cpv:LQ, 4d5y:Q, 4d67:Q, 6d90:Q, 6d9j:Q, 9f1b:BQ, 9f1c:BQ, 9f1d:BQ, 7f5s:LQ, 8fkp:LB, 8fkq:LB, 8fkr:LB, 8fks:LB, 8fkt:LB, 8fku:LB, 8fkv:LB, 8fkw:LB, 8fkx:LB, 8fky:LB, 8fkz:LB, 8fl0:LB, 8fl2:LB, 8fl3:LB, 8fl4:LB, 8fl6:LB, 8fl7:LB, 8fl9:LB, 8fla:LB, 8flb:LB, 8flc:LB, 8fld:LB, 8fle:LB, 8flf:LB, 6frk:Q, 6ftg:Q, 6fti:Q, 6ftj:Q, 8g5y:LQ, 8g5z:LQ, 8g60:LQ, 8g61:LQ, 8g6j:LQ, 8glp:LQ, 6gz3:AQ, 6gz4:AQ, 6gz5:AQ, 6hcf:Q3, 6hcj:Q3, 6hcm:Q3, 6hcq:Q3, 8idt:Z, 8idy:Z, 8ie3:Z, 8ifd:2K, 8ife:2K, 8ine:Z, 8inf:Z, 8ink:Z, 6ip5:2K, 6ip6:2K, 6ip8:2K, 8ipd:Z, 8ipx:Z, 8ipy:Z, 8ir1:Z, 8ir3:Z, 3j7o:Q, 3j7p:Q, 3j7q:Q, 3j7r:Q, 3j92:Q, 3jag:Q, 3jah:Q, 3jai:Q, 3jaj:Q, 3jan:Q, 8jdj:V, 8jdk:V, 8jdl:V, 8jdm:V, 8k2c:LQ, 5lks:LQ, 6lqm:Z, 6lsr:Z, 6lss:Z, 7ls1:K2, 7ls2:K2, 6lu8:Z, 5lzs:Q, 5lzt:Q, 5lzu:Q, 5lzv:Q, 5lzw:Q, 5lzx:Q, 5lzy:Q, 5lzz:Q, 7mdz:Q, 6mtb:Q, 6mtc:Q, 6mtd:Q, 6mte:Q, 7nfx:Q, 7nwg:Q3, 7nwh:Q, 7nwi:Q, 7o7y:BQ, 7o7z:BQ, 7o80:BQ, 7o81:BQ, 7obr:Q, 8ohd:LQ, 8oj0:LQ, 8oj5:LQ, 8oj8:LQ, 6ole:R, 6olf:R, 6olg:AQ, 6oli:R, 6olz:AQ, 6om0:R, 6om7:R, 7ow7:K, 7oyd:Q, 8p2k:BQ, 6p5i:AQ, 6p5j:AQ, 6p5k:AQ, 6p5n:AQ, 8q7z:BQ, 8q87:BQ, 8qfd:Q, 7qgg:R, 8qoi:LQ, 7qvp:LQ, 7qvp:MQ, 7qwq:Q, 7qwr:Q, 7qws:Q, 6qzp:LQ, 6r5q:Q, 6r6g:Q, 6r6p:Q, 6r7q:Q, 8rjb:Q, 8rjc:Q, 8rjd:Q, 8scb:Q, 6sgc:Q2, 6swa:P, 5t2c:K, 6t59:Q3, 7tm3:Q, 7toq:AL18, 7tor:AL18, 7tut:Q, 7ucj:Q, 7uck:Q, 4ug0:LQ, 4ujc:BQ, 4ujd:AQ, 4uje:CQ, 4v5z:Bo, 6w6l:R, 6xa1:LQ, 7xnx:LQ, 7xny:LQ, 8xsx:LQ, 8xsy:LQ, 8xsz:LQ, 6y0g:LQ, 8y0w:LQ, 8y0x:LQ, 6y2l:LQ, 6y57:LQ, 6y6x:LQ, 8yoo:LQ, 8yop:LQ, 6z6l:LQ, 6z6m:LQ, 6z6n:LQ, 7zjw:LT, 7zjx:LT, 6zm7:LQ, 6zme:LQ, 6zmi:LQ, 6zmo:LQ, 6zvk:S2
32 3oa6:A 84 18 0.0286 0.1071 0.5000 1.9 3oa6:B
33 1iod:B 123 64 0.0540 0.1382 0.2656 2.2 1wt9:B, 1y17:B
34 4v6w:CQ 187 48 0.0508 0.0856 0.3333 3.4 6xu6:CQ, 6xu7:CQ, 6xu8:CQ
35 2x0q:A 582 94 0.0762 0.0412 0.2553 3.7 2x0p:A
36 3v8d:A 479 38 0.0317 0.0209 0.2632 4.5 3dax:A, 3dax:B, 3sn5:A, 3sn5:B, 3v8d:B
37 5mrc:d 206 55 0.0635 0.0971 0.3636 5.9 3j6b:d, 5mre:d, 5mrf:d
38 7oyc:Q1 180 42 0.0444 0.0778 0.3333 6.0
39 6jci:A 704 75 0.0635 0.0284 0.2667 7.2
40 6ih6:A 330 56 0.0571 0.0545 0.3214 7.5 6ih3:A, 6ih5:B, 6ih6:B
41 5exc:E 59 23 0.0286 0.1525 0.3913 10.0 5exc:F, 5exc:G, 5exc:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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