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BioLiP
>protein
WSLRWRMQKSTTIAAIAGCSGAATFGGLAGGIVGCIAAGILAILQGFEVNWHNGGGGDRSNPV

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1kvd:A 63 63 1.0000 1.0000 1.0000 4.90e-40 1kvd:C
2 2h12:B 426 34 0.2222 0.0329 0.4118 3.5 2h12:A, 2h12:C, 2h12:D, 2h12:E, 2h12:F
3 6xut:A 589 33 0.1905 0.0204 0.3636 5.1 6xuu:A, 6xuv:A
4 4brs:A 342 52 0.2540 0.0468 0.3077 5.8 4btv:A, 4btv:B, 2x5x:A
5 8pn9:D 110 42 0.1587 0.0909 0.2381 6.0 6s7o:D, 6s7t:D
6 6h3o:F 650 35 0.2063 0.0200 0.3714 6.3 6h3g:A, 6h3g:B, 6h3g:C, 6h3g:F, 6h3g:D, 6h3g:E, 6h3g:G, 6h3g:H, 6h3o:A, 6h3o:B, 6h3o:C, 6h3o:D, 6h3o:E, 6h3o:G, 6h3o:H, 8il5:A
7 3aj3:A 273 21 0.1429 0.0330 0.4286 6.4 4kep:A, 4keq:A
8 1ja9:A 259 50 0.2857 0.0695 0.3600 8.0
9 3aw5:A 438 9 0.1111 0.0160 0.7778 8.6 6k3d:A, 8p4g:A, 8p4g:B
10 3qfe:A 305 35 0.2222 0.0459 0.4000 9.0
11 6deb:B 284 24 0.1111 0.0246 0.2917 9.4 3p2o:A, 3p2o:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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