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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
WSDALALGWPTGITPEAKLNRELWIGSVIASFAVGAIVWGLIFWTSAFHRKKATDTELPRQFGYNMPLELTLTVIPFLII
SVLFYFTVVVQERMMHKDPNPEVVIDVTAFQWNWKFGYQKIAFADGSFDYDGADPERKEAMTSRVGPIRGMTPEDRTYLN
FDKIETLGTSSEIPVLVLPAGKRIEFVLNSADVIHGFWVPEFLFKRDVLPEPKANNSDNVFQVSEIQQTGAFVGRCTEMC
GTFHAMMNFEVRVVEPNDFKAYIDQRNAGKTNAEALAAINQPPLAITTEPFESRRGELV

The query sequence (length=299) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6adq:E 312 310 1.0000 0.9583 0.9645 0.0 6adq:Q, 8ovc:X, 8ovd:Q, 8ovd:X, 7rh5:Q, 7rh5:K, 7rh6:Q, 7rh6:K, 7rh7:Q, 7rh7:K
2 8ovc:Q 286 299 0.9565 1.0000 0.9565 0.0 7e1v:E, 7e1v:Q, 7e1w:E, 7e1w:Q, 7e1x:E, 7e1x:Q, 6hwh:P, 6hwh:L
3 7qhm:E 331 307 0.5385 0.4864 0.5244 6.66e-106 7q21:G, 7q21:g, 7qhm:R, 7qho:E, 7qho:R
4 2yev:B 319 238 0.2207 0.2069 0.2773 7.95e-18 2yev:E
5 1m56:B 260 227 0.2107 0.2423 0.2775 3.22e-17 6ci0:D, 6ci0:B, 3dtu:D, 3dtu:B, 3fye:B, 3fye:D, 3fyi:B, 3fyi:D, 2gsm:B, 2gsm:D, 1m56:H, 1m57:B, 1m57:H, 3om3:B, 3om3:D, 3oma:B, 3oma:D, 3omi:B, 3omi:D, 3omn:B, 3omn:D, 6pw0:B, 6pw0:D, 6pw1:B, 6pw1:D, 5weh:B, 5weh:H
6 7jro:b 239 236 0.1973 0.2469 0.2500 5.09e-16 7jrp:b
7 4w9z:A 138 166 0.1538 0.3333 0.2771 4.89e-15
8 1ar1:B 252 207 0.1873 0.2222 0.2705 5.68e-14 7ate:B, 7atn:B, 7au3:B, 7au6:B, 3ehb:B, 3hb3:B, 1qle:B
9 8dh6:b 236 234 0.1906 0.2415 0.2436 3.89e-13 8e7s:P, 8e7s:p, 8ec0:P, 6giq:b, 6hu9:b, 6hu9:n, 6t0b:b, 6t0b:o, 6t15:b, 6ymx:b, 6ymy:b, 7z10:b
10 8c8q:B 238 203 0.1806 0.2269 0.2660 4.91e-12 8q1b:b
11 8iuf:C2 196 214 0.1739 0.2653 0.2430 1.65e-09 8iuj:c2, 8iuj:C2
12 3abk:B 227 169 0.1371 0.1806 0.2426 3.10e-09 3abk:O, 3abl:B, 3abl:O, 3abm:B, 3abm:O, 3ag1:B, 3ag1:O, 3ag2:B, 3ag2:O, 3ag3:B, 3ag3:O, 3ag4:B, 3ag4:O, 3asn:B, 3asn:O, 3aso:B, 3aso:O, 5b1a:B, 5b1a:O, 5b1b:B, 5b1b:O, 5b3s:B, 5b3s:O, 7coh:B, 7coh:O, 7cp5:B, 7cp5:O, 8d4t:O, 7d5w:B, 7d5w:O, 7d5x:B, 7d5x:O, 7dgq:C1, 7dgr:C4, 7dgs:B9, 7dkf:B3, 2dyr:B, 2dyr:O, 2dys:B, 2dys:O, 2eij:B, 2eij:O, 2eik:B, 2eik:O, 2eil:B, 2eil:O, 2eim:B, 2eim:O, 2ein:B, 2ein:O, 7ev7:B, 7ev7:O, 8gbt:B, 8gbt:O, 8gcq:B, 8gcq:O, 5gpn:z, 5gup:Al, 8gvm:B, 8gvm:O, 8h8r:B, 8h8r:O, 8h8s:B, 8h8s:O, 8ijn:B, 8ijn:O, 5iy5:B, 5iy5:O, 5j4z:BO, 5j7y:BO, 6j8m:B, 6j8m:O, 6juw:B, 6juw:O, 6jy3:B, 6jy4:B, 5luf:y, 6nkn:B, 6nkn:O, 6nmf:B, 6nmf:O, 6nmp:B, 6nmp:O, 7o37:b, 7o3c:b, 7o3e:b, 1occ:B, 1occ:O, 1oco:B, 1oco:O, 1ocr:B, 1ocr:O, 1ocz:B, 1ocz:O, 2occ:B, 2occ:O, 8pw5:o, 8pw5:b, 8pw6:o, 8pw7:o, 7thu:B, 7thu:O, 7tie:B, 7tie:O, 7tih:B, 7tih:O, 7tii:B, 7tii:O, 8ugh:4B, 8ugi:4B, 8ugj:4B, 8ugj:8B, 8ugl:4B, 8ugn:4B, 8ugn:8B, 8ugr:4B, 8ugr:8B, 1v54:B, 1v54:O, 1v55:B, 1v55:O, 7vuw:B, 7vuw:O, 7vvr:B, 7vvr:O, 7w3e:B, 7w3e:O, 5w97:B, 5w97:b, 5wau:B, 5wau:b, 3wg7:B, 3wg7:O, 5x19:B, 5x19:O, 5x1b:B, 5x1b:O, 5x1f:B, 5x1f:O, 3x2q:B, 3x2q:O, 5xdq:B, 5xdq:O, 5xdx:B, 5xdx:O, 7xma:B, 7xma:O, 7xmb:B, 7xmb:O, 5xth:y, 5xti:y, 5xti:By, 7y44:B, 7y44:O, 2y69:B, 2y69:O, 2ybb:M, 7ypy:B, 7ypy:O, 5z84:B, 5z84:O, 5z85:B, 5z85:O, 5z86:B, 5z86:O, 5zco:B, 5zco:O, 5zcp:B, 5zcp:O, 5zcq:B, 5zcq:O, 2zxw:B, 2zxw:O
13 8b6h:DB 604 76 0.0836 0.0414 0.3289 5.10e-07 8b6h:Db, 8bqs:DB, 8bqs:Db, 8gym:c2, 8gym:C2, 8gzu:27, 8gzu:82, 8gzu:c2, 8gzu:C2, 7w5z:C2, 7w5z:c2
14 5z62:B 227 193 0.1505 0.1982 0.2332 5.65e-07
15 6ptt:A 119 74 0.0903 0.2269 0.3649 3.72e-05 6ptt:B, 6pty:A, 6pty:B
16 6kob:B 256 203 0.1538 0.1797 0.2266 0.015 6kob:F, 6koc:B, 6koc:F, 6koe:B
17 8ajz:B 167 74 0.0803 0.1437 0.3243 0.055 3bvd:B, 2cua:A, 2cua:B, 1ehk:B, 3eh3:B, 3eh4:B, 3eh5:B, 4fa7:B, 4faa:B, 2fwl:B, 4g70:B, 4g71:B, 4g72:B, 4g7q:B, 4g7r:B, 4g7s:B, 4gp4:B, 4gp5:B, 4gp8:B, 8hua:B, 8k65:B, 8k6y:B, 4n4y:B, 5ndc:B, 3qjq:B, 3qjr:B, 3qjs:B, 3qjt:B, 3qju:B, 3qjv:B, 2qpd:B, 2qpe:B, 3s33:B, 3s38:B, 3s39:B, 3s3a:B, 3s3b:B, 3s3c:B, 3s3d:B, 3s8f:B, 3s8g:B, 5u7n:A, 5u7n:B, 5u7n:C, 5u7n:D, 5u7n:E, 5u7n:F, 5u7n:G, 5u7n:H, 1xme:B
18 1jnf:A 674 45 0.0502 0.0223 0.3333 1.1 1suv:E, 1suv:F, 1tfd:A
19 1cc3:A 130 27 0.0334 0.0769 0.3704 3.0 1ag0:A, 1ag0:B, 1azn:A, 1azn:B, 1azn:C, 1azn:D, 1azr:A, 1azr:B, 1azr:C, 1azr:D, 1azu:A, 2azu:A, 2azu:B, 2azu:C, 2azu:D, 3azu:A, 3azu:B, 3azu:C, 3azu:D, 4azu:A, 4azu:B, 4azu:C, 4azu:D, 5azu:A, 5azu:B, 5azu:C, 5azu:D, 1bex:A, 1bex:B, 4bww:A, 4bww:B, 4bww:C, 4bww:D, 1cc3:B, 1e5y:A, 1e5y:B, 1e5y:C, 1e5y:D, 1e5z:A, 1e5z:B, 1e5z:C, 1e5z:D, 1e67:A, 1e67:B, 1e67:C, 1e67:D, 1etj:A, 1etj:B, 1etj:C, 1etj:D, 1ezl:A, 1ezl:B, 1ezl:C, 8f5k:A, 8f5k:B, 8f5k:C, 8f5k:D, 8f5l:A, 8f5l:B, 2fnw:A, 2fnw:B, 3fpy:A, 3fq1:A, 3fq2:A, 3fqy:A, 3fs9:A, 3fsa:A, 3fsv:A, 3fsw:A, 3fsw:B, 3fsw:C, 3fsw:D, 3fsz:A, 3fsz:B, 3ft0:A, 3ft0:B, 2ghz:A, 2ghz:B, 2gi0:A, 2gi0:B, 1gr7:A, 1gr7:B, 1gr7:C, 1gr7:D, 6gyi:A, 6gyi:B, 6gyi:C, 6gyi:D, 4hhg:A, 4hhw:A, 4hhw:B, 4hip:A, 4hip:B, 2hx7:A, 2hx7:B, 2hx8:A, 2hx8:B, 2hx9:A, 2hx9:B, 2hxa:A, 2hxa:B, 4hz1:B, 4hz1:C, 5i26:A, 5i26:B, 5i26:C, 5i26:D, 5i28:A, 5i28:B, 5i28:C, 5i28:D, 5i28:E, 5i28:F, 5i28:G, 5i28:H, 5i28:I, 5i28:J, 5i28:K, 5i28:L, 5i28:M, 5i28:N, 5i28:O, 5i28:P, 1i53:A, 1i53:B, 2i7o:A, 2i7s:A, 2i7s:B, 2i7s:C, 2i7s:D, 6iav:A, 6iav:B, 6iav:C, 6iav:D, 3ibo:A, 3ibo:B, 3ibo:C, 3ibo:D, 2idf:A, 2idf:B, 1ils:A, 1ils:B, 1ils:C, 1ils:D, 1ilu:A, 1ilu:B, 1ilu:C, 1ilu:D, 1ilu:E, 1ilu:F, 1ilu:G, 1ilu:H, 1ilu:I, 1ilu:K, 1ilu:L, 1ilu:M, 3in0:A, 3in0:B, 3in0:C, 3in0:D, 3in2:A, 2iwe:A, 2iwe:J, 2iwe:D, 2iwe:G, 4jkn:A, 4jkn:B, 4jkn:C, 4jkn:D, 3jt2:A, 3jt2:B, 3jtb:A, 3jtb:B, 3jtb:C, 3jtb:D, 1jvl:A, 1jvl:B, 1jvo:A, 1jvo:B, 1jvo:C, 1jvo:D, 1jvo:E, 1jvo:F, 1jvo:G, 1jvo:H, 1jvo:I, 1jvo:J, 1jvo:K, 1jvo:L, 1jze:A, 1jzf:A, 1jzg:A, 1jzh:A, 1jzi:A, 1jzi:B, 1jzj:A, 1jzj:B, 4k9j:A, 4ko5:A, 4ko5:B, 4ko6:A, 4ko6:B, 4ko6:C, 4ko6:D, 4ko7:A, 4ko7:B, 4ko7:C, 4ko7:D, 4ko9:A, 4ko9:B, 4ko9:C, 4ko9:D, 4kob:A, 4kob:B, 4kob:C, 4kob:D, 4koc:A, 4mfh:A, 4mfh:B, 4mfh:C, 6mjr:A, 6mjr:C, 6mjr:B, 6mjr:D, 6mjs:A, 6mjs:D, 6mjs:B, 6mjs:C, 6mjt:A, 6mjt:B, 3n2j:A, 3n2j:B, 3n2j:C, 3n2j:D, 3n2j:E, 3n2j:F, 3n2j:G, 3n2j:H, 3n2j:I, 3n2j:J, 3n2j:K, 3n2j:L, 3np3:A, 3np4:A, 1nzr:A, 1nzr:B, 1nzr:C, 1nzr:D, 2oj1:A, 2oj1:B, 3oqr:A, 4qkt:A, 4qkt:B, 4qlw:B, 4qlw:D, 1r1c:A, 1r1c:B, 1r1c:C, 1r1c:D, 7tc5:A, 7tc5:B, 7tc6:A, 7tc6:B, 7tnc:A, 2tsa:A, 2tsa:B, 2tsa:C, 2tsa:D, 2tsb:A, 2tsb:B, 2tsb:C, 2tsb:D, 3u25:A, 3u25:B, 7u2f:A, 1vlx:A, 1vlx:B, 1vlx:C, 1vlx:D, 4wkx:A, 4wkx:B, 1xb3:A, 1xb3:B, 1xb6:A, 1xb6:B, 1xb8:A, 1xb8:C, 2xv0:A, 2xv2:A, 2xv3:A, 2xv3:B
20 3fgg:A 147 56 0.0602 0.1224 0.3214 4.0 3fgg:B
21 7deg:B 147 96 0.0702 0.1429 0.2188 4.4 7deg:E
22 1n04:A 683 59 0.0569 0.0249 0.2881 6.9 2d3i:A, 8fei:A, 1iej:A, 1iq7:A, 1nft:A, 1nnt:A, 1ovt:A, 8x3h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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