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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
WRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQ
VTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSECAK
RGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIG

The query sequence (length=213) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jig:A 216 213 1.0000 0.9861 1.0000 2.92e-161 3gze:A, 3gze:C
2 2jig:B 195 213 0.9014 0.9846 0.9014 1.99e-139 3gze:B, 3gze:D
3 5v7y:A 207 197 0.3521 0.3623 0.3807 8.49e-39 5hv0:A, 5hv0:B, 5hv4:A, 5iav:A, 5iav:B, 5iax:A, 5iax:B, 5v7y:B, 5v7y:D, 5v7y:C
4 6tp5:A 370 200 0.3146 0.1811 0.3350 6.65e-20 6tp5:B
5 6tp5:A 370 36 0.0657 0.0378 0.3889 0.62 6tp5:B
6 5c5u:B 190 202 0.2911 0.3263 0.3069 3.78e-16 5c5t:A, 5c5t:B, 5c5u:A
7 6w4q:D 755 193 0.2441 0.0689 0.2694 0.67 5w6p:A, 5w6p:B, 5w6p:C, 5w6p:D, 5w6p:E, 5w6p:F, 5w6s:A
8 3ggl:A 161 54 0.0892 0.1180 0.3519 5.9 6oe2:A
9 3oa8:A 229 39 0.0516 0.0480 0.2821 6.7 3oa8:C, 3oa8:E, 3ocd:A, 3ocd:C
10 8ajk:B 447 32 0.0516 0.0246 0.3438 8.4 8ajj:C, 8ajj:A, 8ajj:B, 8ajj:D, 8ajk:A
11 5xc3:A 168 42 0.0704 0.0893 0.3571 9.8 5xc5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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