Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
WQARGLGTARLQLVEFSAFVEPPDAVDSYQRHLFVHISQPPLESVDVRQIYDKFPEKKGGLRELYDRGPPHAFFLVKFWA
DLNWSGGFYGVSSQYESLEHMTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVYRLLRSPMCEYLVNFLHKLRQLPERYM
MNSVLENFTILQVVTNRDTQELLLCTAYVFEVSTSERGAQHHIYRLVR

The query sequence (length=208) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6s60:B 214 213 1.0000 0.9720 0.9765 1.45e-153 6cdy:A, 6cdy:B, 8cuh:A, 8cuh:B, 5dq8:A, 5dq8:B, 5dqe:A, 5dqe:B, 8e1o:A, 8e1o:B, 6e5g:B, 6e5g:A, 7oyj:B, 8p29:A, 8poj:A, 8pom:B, 8pom:A, 8pon:A, 8pux:A, 8puy:B, 6s64:B, 6s66:B, 6s69:B, 6s6j:B, 7t2j:B, 7t2j:A, 7t2k:B, 7t2k:A, 7t2l:A, 7t2m:B, 7typ:A, 7typ:B, 7tyq:A, 7tyq:B, 7tyu:A, 7tyu:B, 6uyb:A, 6uyb:B, 6uyc:A, 6uyc:B, 6vah:A, 6vah:B
2 8q68:A 215 210 0.7452 0.7209 0.7381 2.14e-115 7cmm:A, 7cmm:B, 7cmm:C, 7cmm:D, 7li5:A, 7li5:B, 8q68:B, 7zjp:A, 7zjp:B
3 7cnl:B 218 217 0.7212 0.6881 0.6912 9.40e-112 8a0u:A, 8a0u:B, 8a0u:C, 8a0u:D, 8a0v:A, 8a0v:B, 8a0v:C, 8a0v:D, 7cnl:A, 7cnl:C, 7cnl:D, 8p0m:A, 8p0m:B, 8p0m:C, 8p0m:D, 7zjq:A, 7zjq:B, 7zjq:C, 7zjq:D
4 8c17:A 220 217 0.7067 0.6682 0.6774 3.00e-108 8caa:A, 8caa:B, 6l9f:A, 6l9f:B, 6q36:A, 6q36:B, 6sba:A, 6sen:A, 6sen:B, 6seo:A, 5xjd:A, 5xjd:B
5 3jua:G 190 207 0.6442 0.7053 0.6473 2.97e-92
6 5wtk:A 1215 138 0.1587 0.0272 0.2391 0.21 7dmq:A
7 3k4h:A 282 44 0.0721 0.0532 0.3409 1.4 3k4h:B
8 5kzl:A 205 72 0.1058 0.1073 0.3056 2.9
9 7kik:A 121 72 0.1010 0.1736 0.2917 4.3
10 6we0:A 119 54 0.0865 0.1513 0.3333 8.5 6we1:A, 6we1:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218