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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
WPYFIIDLYHWDKHTQKEKGKIALQVNQSYGLLRDYFELAVTWANEEFREMFHGPLDRITTYGGPTSEFLKENGINEVVL
LDPWAEEVLSEKDFDVKAFIIGGIVDTNKKKTTPKIGEELESAGIKVRRRKIVLRGDVVGVPDRINRILGIILKMMVEGK
SMDEAVYEMQ

The query sequence (length=170) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6emu:A 170 170 1.0000 1.0000 1.0000 1.34e-124 6emu:B, 6emu:C, 6emv:A, 6emv:B, 6emv:C
2 5a7y:B 278 174 0.2765 0.1691 0.2701 6.28e-11 5a7y:A
3 4jwf:A 187 178 0.2412 0.2193 0.2303 2.6 4jwf:B, 4jwh:A, 4jwh:B
4 7etl:A 294 71 0.1353 0.0782 0.3239 2.7 7de0:B, 7de0:A, 7de0:C, 7de0:D, 7etk:A, 7etk:B, 7etl:B, 6oxh:A, 6oxh:B, 6oxj:A, 6oxj:B, 7wsb:A, 7wsb:B, 7wsb:C, 7wsb:D, 7wsb:E, 7wsb:F, 4y5s:A, 4y5s:B, 4y5t:A, 4y5t:B
5 4dxg:A 194 30 0.0647 0.0567 0.3667 5.4 4rco:A, 4rco:B
6 8ot8:A 412 39 0.0765 0.0316 0.3333 5.8 8ot8:B, 8ot8:C, 8ot8:D
7 5cr9:A 290 116 0.1647 0.0966 0.2414 6.1
8 4yb6:A 296 57 0.1235 0.0709 0.3684 6.3 5ub9:A, 5ub9:B, 5ubg:A, 5ubg:B, 5ubh:A, 5ubh:B, 5ubi:A, 5ubi:B, 4yb5:A, 4yb5:E, 4yb5:B, 4yb5:C, 4yb5:F, 4yb5:D, 4yb6:E, 4yb6:B, 4yb6:C, 4yb6:F, 4yb6:D, 4yb7:B, 4yb7:C, 4yb7:D, 4yb7:E, 4yb7:I, 4yb7:K, 4yb7:A, 4yb7:F, 4yb7:G, 4yb7:H, 4yb7:J, 4yb7:L
9 3hwr:A 299 25 0.0588 0.0334 0.4000 6.7 3hwr:B
10 3ajz:A 132 30 0.0471 0.0606 0.2667 6.7 3ak0:A, 3ak0:B
11 5i4d:B 193 29 0.0647 0.0570 0.3793 6.7 5i4d:A
12 4fmw:A 178 45 0.0941 0.0899 0.3556 7.2 4fmw:B
13 3jyu:B 216 30 0.0647 0.0509 0.3667 7.5
14 3r6k:A 301 30 0.0706 0.0399 0.4000 7.8
15 6yo9:A 398 44 0.0765 0.0327 0.2955 9.2 6twk:A, 6twk:B, 6yo9:B
16 4jwj:A 193 140 0.1941 0.1710 0.2357 9.8 4jwj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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