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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
WNSRYSYNQLKNKDSLIMFLVEIFRSLFVSNCIDKNIDNVLLSIEEMFIDHYYNPQHSRLKYLIDDVGIFFTKLPITKAF
HTYNKKYRITKRLYAPPTFNEVRHILNLAQILSLEEGLDLLTFDANETLYPDGHDFNDEVLASYISCLLKKMNIAIVTAA
SYNNDAEKYQKRLENLLKYFSKHNIKDGSYKNFYVMGGESNYLFKCNEEATLYSVPENEWRHYKKFVDYDTVQEILNISE
KCLEKVIKDFGLCAQIQRKEKSIGLVPNKIMIKYEVLEEAVIRIKKEIIKNKITAPYCAFNGGQDLWVDVGNKAEGLLIL
QKLLKIQKKKCCHIGDQFLHSGNDFPTRFCSLTLWVSNPQETKACLKSIMH

The query sequence (length=371) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rmw:C 386 374 1.0000 0.9611 0.9920 0.0 6rmd:D, 6rme:A, 6rme:B, 6rme:C, 6rme:D, 6rme:E, 6rme:F, 6rme:G, 6rme:H, 6rmw:A, 6rmw:B, 6rmw:D, 6rmw:E, 6rmw:F, 6rmw:G, 6rmw:H
2 8jb3:A 419 342 0.3019 0.2673 0.3275 1.41e-48
3 8j6h:D 407 335 0.2938 0.2678 0.3254 1.41e-46 8j6h:A, 8j6h:B, 8j6h:C
4 5te4:G 341 51 0.0431 0.0469 0.3137 0.032
5 4bnd:B 253 60 0.0539 0.0791 0.3333 0.13 4bnd:A
6 8d0y:G 455 51 0.0431 0.0352 0.3137 0.22 5cez:G, 6ch8:G, 6de7:G, 5i8h:A, 5i8h:C, 7l7u:A, 7l7u:C, 7l7u:E, 6mtj:G, 6mtn:G, 6mu6:G, 6mu7:G, 6mu8:G, 7pc2:A, 7rai:A, 7rai:C, 7rai:E, 8s2e:E, 5t3z:G, 8tjr:B, 8tjr:C, 8tjs:G, 8tjs:N, 8tjs:O, 8ttw:E, 8ttw:I, 8ttw:A, 4tvp:G, 5u7m:G, 5u7o:G, 7ucf:G, 5utf:G, 5v7j:G, 4zmj:G
7 4r4n:B 342 51 0.0404 0.0439 0.2941 0.23 4r4n:A, 4r4n:E, 4r4n:I, 4r4n:M, 4r4n:P, 4r4n:S, 4r4n:V
8 7txd:A 397 51 0.0431 0.0403 0.3137 0.24 7txd:E
9 8b6f:AS 172 118 0.0809 0.1744 0.2542 0.25 8bqs:AS, 8gym:a6, 8gym:A6, 7tgh:A6
10 6cm3:D 372 55 0.0458 0.0457 0.3091 0.30 6cm3:E, 6cm3:F, 7lo6:C, 7lo6:A, 7lo6:E, 7lok:A, 7lok:C, 7lok:E, 6u0l:B, 6u0l:C, 6u0n:A, 6u0n:C
11 7mxd:A 472 46 0.0377 0.0297 0.3043 0.47 7mxd:F, 7mxd:G, 7n28:A
12 5fa2:A 336 50 0.0431 0.0476 0.3200 0.76
13 6m0r:A 750 277 0.1779 0.0880 0.2383 0.77 7tao:A
14 1e5s:A 260 75 0.0512 0.0731 0.2533 1.0 1e5s:B
15 1gc1:G 297 51 0.0377 0.0471 0.2745 1.1
16 8fae:A 468 50 0.0404 0.0321 0.3000 1.6 8fad:C, 8fad:E, 8fad:A, 8fae:C, 8fae:E
17 3zm8:A 444 69 0.0485 0.0405 0.2609 1.7
18 4xmp:G 337 51 0.0404 0.0445 0.2941 1.8
19 8czz:A 440 50 0.0404 0.0341 0.3000 2.2 8czz:E, 8czz:I
20 5fyj:G 479 51 0.0350 0.0271 0.2549 2.5
21 3j6q:A 1058 71 0.0593 0.0208 0.3099 3.3 3j6q:B, 3j6q:C, 3j6q:D, 3j6q:E, 3jay:A, 3jb0:A, 3jb1:A, 3jb2:A, 3jb3:A, 7whp:A, 7whp:B
22 8d53:G 446 51 0.0404 0.0336 0.2941 3.5
23 3grx:A 82 69 0.0512 0.2317 0.2754 3.7
24 7n6u:B 595 55 0.0404 0.0252 0.2727 3.8 5fuu:A, 5fuu:D, 5fuu:E, 5fuu:F, 6j5e:K, 7n6u:C, 7n6u:A, 7n6w:A, 7n6w:B, 7n6w:C, 6olp:C, 7ska:B, 7ska:O, 7ska:Z, 6vpx:C, 5y14:C, 5y14:A, 5y14:B, 5yc0:B, 5yc0:C, 5yc0:F
25 1kyt:A 225 44 0.0350 0.0578 0.2955 4.4 1kyt:B, 1l6r:A, 1l6r:B
26 3tgs:A 345 50 0.0404 0.0435 0.3000 5.8 5f4l:A, 5f4l:B, 5f4p:D, 5f4p:A, 5f4r:A, 5f4r:C, 5f4u:A, 5f4u:B, 8fly:A, 8fly:B, 8fly:C, 8fly:D, 8flz:A, 8flz:D, 8flz:B, 8flz:C, 8fm0:B, 8fm0:A, 8fm0:C, 8fm0:D, 8fm2:D, 8fm2:B, 8fm2:A, 8fm2:C, 8fm3:A, 8fm3:C, 8fm3:D, 8fm3:B, 8fm4:B, 8fm4:D, 8fm4:A, 8fm4:C, 8fm5:D, 8fm5:A, 8fm5:C, 8fm5:B, 8fm7:A, 8fm7:B, 8fm7:C, 8fm7:D, 8fm8:C, 8fm8:D, 8fm8:A, 8fm8:B, 4i53:A, 4i53:B, 7rsx:C, 7rsx:B, 7rsx:A, 7rsx:D, 7rsy:A, 7rsy:B, 7rsy:C, 7rsy:D, 7rsz:B, 7rsz:A, 7rsz:C, 7rsz:D, 3tgs:B, 7tjo:D, 7tjo:A, 7tjo:C, 7tjo:B, 7tjp:A, 7tjp:B, 7tjp:D, 7tjp:C
27 5w4l:G 357 48 0.0404 0.0420 0.3125 6.3 6bf4:G, 8dcq:A, 4dko:A, 4dko:C, 4dkp:A, 4dkp:C, 4dkq:A, 4dkr:A, 4dkr:C, 4dku:A, 4dku:B, 4dkv:A, 4dkv:B, 4dvs:A, 4dvs:B, 4dvt:A, 4dvt:B, 4dvv:A, 4dvv:B, 4dvw:A, 4dvw:B, 4dvx:A, 4dvx:B, 8f9z:A, 8fa0:A, 8gcz:A, 8gd0:A, 8gd1:A, 8gd3:A, 8gd5:A, 8gdj:A, 8gdk:A, 8gjt:A, 4i54:A, 4i54:B, 5kjr:G, 4lsq:G, 6mfp:G, 6mfp:A, 6mg7:G, 7n8q:G, 3ngb:G, 3ngb:A, 3ngb:D, 3ngb:I, 6one:A, 6onf:A, 6onh:A, 6onv:A, 6ooo:A, 6p9n:A, 4rfn:G, 4rfn:A, 4rfo:G, 4rz8:A, 4rz8:B, 4rz8:C, 4rz8:D, 3se9:G, 5u6e:A, 5u6e:B, 5uem:G, 6usw:A, 6ut1:A, 5w4l:A, 6w4m:G
28 7mw8:C 385 25 0.0296 0.0286 0.4400 7.5 2gsn:A, 2gsn:B, 2gso:A, 2gso:B, 2gsu:A, 2gsu:B, 7mw8:A, 7mw8:D, 7mw8:B, 7mw8:E, 7mw8:F, 7n1s:A, 7n1s:B, 2rh6:A, 2rh6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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