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BioLiP
>protein
WNKKGKVNEATVQARKEKKRLKETNQFTGDYTGERPPHPWLSAKRLRSIMTQYQVFANKNRLNIKVDKKDAVEMKKQFEE
IGAHEYYRMRTEQIINEKNNQVIDQINKEIETLPFNIYEEITKMPKDKIYNFNTDSNSPYILYFEQIARMFDEEHLTKLK
VSQRLQKLAEDKLGEND

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6z1p:AH 177 177 1.0000 1.0000 1.0000 4.17e-131
2 3cpm:A 184 69 0.1073 0.1033 0.2754 0.77 3m6o:A, 3m6o:B, 3m6p:A, 3m6p:B, 3m6q:A, 3m6r:A, 3m6r:B, 3m6r:C, 3m6r:D, 3o3j:A, 3pn2:A, 3pn3:A, 3pn3:B, 3pn4:A, 3pn5:A, 3pn6:A, 3pn6:B
3 5v8f:E 422 62 0.1073 0.0450 0.3065 3.1 6wgc:E, 6wgg:E, 6wgi:E
4 7tjh:E 439 62 0.1073 0.0433 0.3065 4.0 7tji:E, 7tjj:E, 7tjk:E
5 5zr1:E 460 62 0.1073 0.0413 0.3065 4.1 7mca:E, 6rqc:E, 7tjf:E
6 1q19:A 500 87 0.1017 0.0360 0.2069 5.9 1q19:B, 1q19:C, 1q19:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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