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BioLiP
>protein
WLIEVPGNADPLEDQFAKRIQAKKERVAKNELNRLRNLARAHKMQLPSAAGLHPTGHQSKEELGRAMQVAKVSTASVGRF
QERLPKEKVKKRKFQPLFGDFAAEKKNQLELLRVMN

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fkx:ST 148 121 1.0000 0.7838 0.9587 2.46e-79 8fkt:ST, 8fku:ST, 8fkv:ST, 8fkw:ST, 8fky:ST
2 8fl0:ST 199 44 0.3793 0.2211 1.0000 1.35e-24 8ir1:R, 8ir3:R
3 7v6c:B 260 118 0.2759 0.1231 0.2712 0.74
4 4gy5:A 215 40 0.1034 0.0558 0.3000 3.3 3ask:A, 3ask:B, 3ask:D, 3asl:A, 3db3:A, 7fb7:B, 4gy5:B, 6iiw:A, 2lgg:A, 2lgk:A, 2lgl:A, 4qqd:A, 4qqd:B, 3shb:A, 3sou:A, 3sou:B, 3sow:A, 3sow:B, 3sox:A, 3sox:B, 3t6r:B, 3t6r:A, 8wms:A, 5xpi:A, 5yy9:A, 5yy9:B, 3zvy:A, 3zvy:B, 3zvz:B
5 7oya:M1 134 33 0.1034 0.0896 0.3636 6.8 7oyb:M1
6 3cea:A 342 57 0.1293 0.0439 0.2632 7.5 3cea:B, 3cea:C, 3cea:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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