Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
WIDSTSPVNEQITNPALVEQIYHSNNDQLLWSDLATANHFEAQLEVIHRASFSPLFSRQLFALKSYRQQDRWHEYDVLAT
DTLLQYLSYAEQAPKVGIAWFFEGQLDQPLAPPSEEAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFN
EVALYEQMERLKRPGDPLSHREALVQRLALVNLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSV
TERLALLALNAERIRLWPTQQDSMIVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIM
VEDILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTP
SKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVSTQAIALKKRIPVHIIYQTVWYEEGVLHYRDDIYHYDA
LALG

The query sequence (length=484) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ajo:A 492 484 1.0000 0.9837 1.0000 0.0 7ajx:A, 7ajz:A
2 6ntw:A 505 478 0.3306 0.3168 0.3347 1.13e-85
3 7kgm:A 512 483 0.3326 0.3145 0.3333 8.09e-81
4 7kgn:A 462 457 0.3120 0.3268 0.3304 3.29e-61
5 5nm7:G 260 66 0.0434 0.0808 0.3182 0.20 5nm7:A
6 6t7j:B 632 87 0.0517 0.0396 0.2874 1.2 6t7j:A, 6t7j:D
7 3t0c:A 737 61 0.0434 0.0285 0.3443 1.9
8 5tv7:A 158 20 0.0227 0.0696 0.5500 3.0 5tv7:B
9 6fj1:A 253 41 0.0310 0.0593 0.3659 3.3 6fj1:B, 6fj1:C, 3zgp:A
10 7dnp:A 174 34 0.0227 0.0632 0.3235 4.9
11 8e23:D 603 87 0.0455 0.0365 0.2529 5.3
12 1jju:A 489 41 0.0331 0.0327 0.3902 9.9 1pby:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218