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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
WHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYKIQKELEEKRRS
R

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2agh:B 87 81 1.0000 0.9310 1.0000 2.83e-56 6dmx:D, 6dmx:B, 6dmx:I, 6dmx:G, 6dnq:D, 6dnq:B, 4i9o:A, 1kdx:A, 2kwf:A, 2lxs:A, 2lxt:A, 1sb0:A
2 7tbh:A 243 76 0.8765 0.2922 0.9342 3.68e-46 8a2l:AAA, 8a2m:AAA, 7a4m:A, 8a5n:AAA, 3ajo:A, 3ajp:A, 3ajq:A, 8b7o:AAA, 6b8f:A, 6b8g:A, 2cei:A, 2chi:A, 2cih:A, 7ck8:A, 7ck8:B, 7ck8:C, 7ck8:D, 7ck8:E, 7ck8:F, 7ck8:G, 7ck8:H, 7ck8:I, 7ck8:J, 7ck8:K, 7ck8:L, 7ck9:A, 2clu:A, 5cmq:A, 5cmr:A, 2cn6:A, 2cn7:A, 8cps:1, 8cps:E, 8cps:Y, 8cps:2, 8cps:I, 8cps:U, 8cps:4, 8cps:S, 8cps:r, 8cps:A, 8cps:F, 8cps:e, 8cps:B, 8cps:O, 8cps:P, 8cps:H, 8cps:K, 8cps:X, 8cpt:1, 8cpt:E, 8cpt:Y, 8cpt:2, 8cpt:I, 8cpt:U, 8cpt:4, 8cpt:S, 8cpt:r, 8cpt:A, 8cpt:F, 8cpt:e, 8cpt:B, 8cpt:O, 8cpt:P, 8cpt:H, 8cpt:K, 8cpt:X, 8cpu:1, 8cpu:E, 8cpu:Y, 8cpu:2, 8cpu:I, 8cpu:U, 8cpu:4, 8cpu:S, 8cpu:r, 8cpu:A, 8cpu:F, 8cpu:e, 8cpu:B, 8cpu:O, 8cpu:P, 8cpu:H, 8cpu:K, 8cpu:X, 8cpw:1, 8cpw:E, 8cpw:Y, 8cpw:2, 8cpw:I, 8cpw:U, 8cpw:4, 8cpw:S, 8cpw:r, 8cpw:A, 8cpw:F, 8cpw:e, 8cpw:B, 8cpw:O, 8cpw:P, 8cpw:H, 8cpw:K, 8cpw:X, 8cpx:1, 8cpx:E, 8cpx:Y, 8cpx:2, 8cpx:I, 8cpx:U, 8cpx:4, 8cpx:S, 8cpx:r, 8cpx:A, 8cpx:F, 8cpx:e, 8cpx:B, 8cpx:O, 8cpx:P, 8cpx:H, 8cpx:K, 8cpx:X, 8dnp:A, 8dnp:B, 8dnp:C, 8dnp:D, 8dnp:E, 8dnp:F, 8dnp:G, 8dnp:H, 8dnp:I, 8dnp:J, 8dnp:K, 8dnp:L, 8dnp:M, 8dnp:N, 8dnp:O, 8dnp:P, 8dnp:Q, 8dnp:R, 8dnp:S, 8dnp:T, 8dnp:U, 8dnp:V, 8dnp:W, 8dnp:X, 8emq:A, 8emq:B, 8emq:C, 8emq:D, 8emq:E, 8emq:F, 8emq:G, 8emq:H, 8emq:I, 8emq:J, 8emq:K, 8emq:L, 8emq:M, 8emq:N, 8emq:O, 8emq:P, 8emq:Q, 8emq:R, 8emq:S, 8emq:T, 8emq:U, 8emq:V, 8emq:W, 8emq:X, 1fha:A, 2fha:A, 6ftv:A, 5gn8:A, 5gn8:B, 6h6t:G, 6h6t:H, 6h6t:I, 6h6t:J, 6h6t:K, 6h6t:L, 6ipo:A, 6ipo:B, 6ipp:A, 6ipq:A, 2iu2:A, 9iuy:A, 9iuy:B, 9iuy:C, 9iuy:D, 9iuy:E, 9iuy:F, 9iuy:G, 9iuy:H, 9iuy:I, 9iuy:J, 9iuy:K, 9iuy:L, 9iuy:M, 9iuy:N, 9iuy:O, 9iuy:P, 9iuy:Q, 9iuy:R, 9iuy:S, 9iuy:T, 9iuy:U, 9iuy:V, 9iuy:W, 9iuy:X, 8j9l:A, 8j9l:B, 8j9l:C, 8j9l:D, 8j9l:E, 8j9l:F, 8j9l:G, 8j9l:H, 8j9l:I, 8j9l:J, 8j9l:K, 8j9l:L, 8j9m:A, 8j9m:B, 8j9m:C, 8jai:A, 8jai:B, 8jai:D, 8jai:E, 8jai:F, 8jai:G, 8jai:H, 8jai:I, 8jai:L, 8jai:M, 8jai:P, 8jai:Q, 8jai:S, 8jai:W, 5jkk:A, 5jkk:B, 5jkk:C, 5jkk:D, 5jkk:E, 5jkk:F, 5jkk:G, 5jkk:H, 5jkl:G, 5jkl:H, 5jkl:I, 5jkl:J, 5jkl:K, 5jkl:L, 5jkm:G, 5jkm:H, 5jkm:I, 5jkm:J, 5jkm:K, 5jkm:L, 7k26:A, 7k26:B, 7k26:C, 7k26:E, 7k26:F, 7k26:G, 7k26:H, 7k26:I, 7k26:J, 7k26:L, 7k3v:A, 7k3v:B, 7k3v:C, 7k3v:D, 7k3v:E, 7k3v:F, 7k3v:G, 7k3v:H, 7k3v:I, 7k3v:J, 7k3v:K, 7k3v:L, 7k3v:M, 7k3v:N, 7k3v:O, 7k3v:P, 7k3v:Q, 7k3v:R, 7k3v:S, 7k3v:T, 7k3v:U, 7k3v:V, 7k3v:W, 7k3v:X, 7k3w:A, 7k3w:B, 7k3w:C, 7k3w:D, 7k3w:E, 7k3w:F, 7k3w:G, 7k3w:H, 7k3w:I, 7k3w:J, 7k3w:K, 7k3w:L, 7k3w:M, 7k3w:N, 7k3w:O, 7k3w:P, 7k3w:Q, 7k3w:R, 7k3w:S, 7k3w:T, 7k3w:U, 7k3w:V, 7k3w:W, 7k3w:X, 6ke2:A, 6ke4:A, 7ke3:A, 7ke3:H, 7ke3:B, 7ke3:L, 7ke3:C, 7ke3:D, 7ke3:G, 7ke3:E, 7ke3:I, 7ke3:F, 7ke3:J, 7ke3:K, 7ke5:A, 7ke5:H, 7ke5:B, 7ke5:C, 7ke5:J, 7ke5:L, 7ke5:D, 7ke5:E, 7ke5:I, 7ke5:F, 7ke5:G, 7ke5:K, 8kfd:A, 5n26:A, 5n27:A, 5oba:A, 5oba:B, 5oba:C, 5oba:D, 5oba:E, 5oba:F, 5oba:G, 5oba:H, 5oba:I, 5oba:J, 5oba:K, 5oba:L, 5oba:M, 5oba:N, 5oba:O, 5oba:P, 5oba:Q, 5oba:R, 5oba:S, 5oba:T, 5oba:U, 5oba:V, 5oba:W, 5oba:X, 4oyn:A, 7pf1:A, 7pf1:B, 7pf1:C, 7pf1:D, 7pf1:E, 7pf1:F, 7pf1:G, 7pf1:H, 7pf1:I, 7pf1:J, 7pf1:K, 7pf1:L, 7pf1:M, 7pf1:N, 7pf1:O, 7pf1:P, 7pf1:Q, 7pf1:R, 7pf1:S, 7pf1:T, 7pf1:U, 7pf1:V, 7pf1:W, 7pf1:X, 8pp2:G, 8pp2:H, 8pp2:I, 8pp2:J, 8pp2:K, 8pp2:L, 8pp3:G, 8pp3:H, 8pp3:I, 8pp3:J, 8pp3:K, 8pp3:L, 8pp4:G, 8pp4:H, 8pp4:I, 8pp4:J, 8pp4:K, 8pp4:L, 8pvc:A, 8qu9:A, 8rqb:A, 8rqb:B, 8rqb:C, 8rqb:D, 8rqb:E, 8rqb:F, 8rqb:G, 8rqb:H, 8rqb:I, 8rqb:J, 8rqb:K, 8rqb:L, 8rqb:M, 8rqb:N, 8rqb:O, 8rqb:P, 8rqb:Q, 8rqb:R, 8rqb:S, 8rqb:T, 8rqb:U, 8rqb:V, 8rqb:W, 8rqb:X, 7rrp:A, 7rrp:B, 7rrp:C, 7rrp:D, 7rrp:E, 7rrp:F, 7rrp:G, 7rrp:H, 7rrp:I, 7rrp:J, 7rrp:K, 7rrp:L, 7rrp:M, 7rrp:N, 7rrp:O, 7rrp:P, 7rrp:Q, 7rrp:R, 7rrp:S, 7rrp:T, 7rrp:U, 7rrp:V, 7rrp:W, 7rrp:X, 6s61:A, 6s61:B, 6s61:C, 6s61:D, 6s61:E, 6s61:F, 6s61:G, 6s61:H, 6s61:I, 6s61:J, 6s61:K, 6s61:L, 6s61:M, 6s61:N, 6s61:O, 6s61:P, 6s61:Q, 6s61:R, 6s61:S, 6s61:T, 6s61:U, 6s61:V, 6s61:W, 6s61:X, 6sht:A, 8t4q:A, 8t4q:B, 8t4q:C, 8t4q:D, 8t4q:E, 8t4q:F, 8t4q:G, 8t4q:H, 8t4q:I, 8t4q:J, 8t4q:K, 8t4q:L, 8t4q:M, 8t4q:N, 8t4q:O, 8t4q:P, 8t4q:Q, 8t4q:R, 8t4q:S, 8t4q:T, 8t4q:U, 8t4q:V, 8t4q:W, 8t4q:X, 7tbh:B, 7tbh:C, 7tbh:D, 7tbh:E, 7tbh:F, 7tbh:G, 7tbh:H, 7tbh:I, 7tbh:J, 7tbh:K, 7tbh:L, 7tbh:M, 7tbh:N, 7tbh:O, 7tbh:P, 7tbh:Q, 7tbh:R, 7tbh:S, 7tbh:T, 7tbh:U, 7tbh:V, 7tbh:W, 7tbh:X, 8tue:A, 8tue:B, 8tue:C, 8tue:E, 8tue:F, 8tue:H, 8tue:M, 8tue:N, 8tue:O, 8tue:P, 8tue:Q, 8tue:R, 8tue:T, 8tue:U, 8tue:V, 8tue:W, 8tue:X, 5up7:A, 5up9:A, 5up9:C, 5up9:D, 5up9:E, 7vd8:A, 7vd8:B, 7vd8:C, 7vd8:D, 7vd8:E, 7vd8:F, 7vd8:G, 7vd8:H, 7vd8:I, 7vd8:J, 7vd8:K, 7vd8:L, 7vd8:M, 7vd8:N, 7vd8:O, 7vd8:P, 7vd8:Q, 7vd8:R, 7vd8:S, 7vd8:T, 7vd8:U, 7vd8:V, 7vd8:W, 7vd8:X, 5vtd:A, 8w92:A, 8wb3:A, 3wnw:A, 3wnw:B, 3wnw:C, 3wnw:D, 3wnw:E, 3wnw:F, 3wnw:G, 3wnw:H, 3wnw:I, 3wnw:J, 3wnw:K, 3wnw:L, 6wyf:A, 6wyg:A, 6wyg:B, 6wyg:C, 6wyg:D, 6wyh:A, 6wyh:B, 6wyh:C, 6wyh:D, 4y08:A, 8y6f:A, 8y6f:B, 8y6f:G, 8y6f:L, 8y6f:C, 8y6f:D, 8y6f:E, 8y6f:F, 8y6f:H, 8y6f:I, 8y6f:J, 8y6f:K, 4ykh:A, 7zg7:A, 7zg7:B, 7zg7:C, 7zg7:D, 7zg7:E, 7zg7:F, 7zg7:G, 7zg7:H, 7zg7:I, 7zg7:J, 7zg7:K, 7zg7:L, 7zg7:M, 7zg7:N, 7zg7:O, 7zg7:P, 7zg7:Q, 7zg7:R, 7zg7:S, 7zg7:T, 7zg7:U, 7zg7:V, 7zg7:W, 7zg7:X, 4zjk:A
3 7wh9:A 476 50 0.2346 0.0399 0.3800 0.14 7wh9:B, 7wh9:C
4 6q89:A 852 53 0.2222 0.0211 0.3396 0.77 7ntz:A, 7nu3:A, 7nu6:A, 7nu7:A, 7nub:A, 6q8b:A, 6q8c:A
5 7nu2:A 875 53 0.2222 0.0206 0.3396 0.81 7a0p:A, 7ap2:A, 7nty:A, 7nu0:A, 7nu1:A, 7nu4:A, 7nu5:A, 7nu8:A, 7nu9:A, 7nua:A, 7nuc:A, 6q8a:A, 6ykk:A, 6ykl:A, 6ykn:A, 6yko:A, 6ykq:A, 6yks:A, 6ykt:A, 6yku:A, 6ykv:A, 6ykw:A, 6ykx:A, 7yp8:A
6 7pkt:Q 498 26 0.1605 0.0261 0.5000 2.8
7 4zpk:B 321 57 0.2099 0.0530 0.2982 3.1 8ck3:A, 8ck4:A, 8ck8:A, 6czw:A, 6d09:A, 6d0b:A, 6e3s:B, 6e3t:B, 6e3u:B, 3f1o:A, 4ghi:A, 4gs9:A, 3h7w:A, 3h82:A, 5tbm:A, 5ufp:A, 7w80:B, 6x21:A, 6x28:A, 6x2h:A, 6x37:A, 6x3d:A, 4xt2:C, 4zqd:B
8 6eej:A 264 31 0.1481 0.0455 0.3871 3.2 6eej:B, 6eej:C, 6eej:D, 4zbt:A, 4zbt:B, 4zbt:C, 4zbt:D
9 7vlc:B 144 21 0.0864 0.0486 0.3333 3.5 7vlc:F, 7vld:B, 7vld:F, 7vle:B, 7vle:F, 7vlf:B, 7vlf:F, 3wct:B, 3wct:F, 3wcu:B, 3wcu:F, 3wcv:B, 3wcv:F, 3wcw:B, 3wcw:F
10 6rxt:UR 447 74 0.2469 0.0447 0.2703 4.9 5oql:N, 6rxu:UR, 6rxv:UR, 6rxy:UR, 6rxz:UR
11 7ylo:A 311 27 0.1235 0.0322 0.3704 5.5 7ylo:B
12 6n9x:B 500 35 0.1235 0.0200 0.2857 5.9 1e0j:A, 1e0j:B, 1e0j:C, 1e0j:D, 1e0j:E, 1e0j:F, 6n7i:A, 6n7i:B, 6n7i:C, 6n7i:D, 6n7i:E, 6n7n:A, 6n7n:B, 6n7n:C, 6n7n:D, 6n7n:E, 6n7n:F, 6n7s:A, 6n7s:B, 6n7s:C, 6n7s:D, 6n7s:E, 6n7t:A, 6n7t:B, 6n7t:C, 6n7t:D, 6n7t:E, 6n7t:F, 6n7v:A, 6n7v:B, 6n7v:C, 6n7v:D, 6n7v:E, 6n7v:F, 6n9u:E, 6n9v:A, 6n9v:B, 6n9v:C, 6n9v:D, 6n9v:E, 6n9v:F, 6n9w:A, 6n9w:B, 6n9w:C, 6n9w:D, 6n9w:E, 6n9x:A, 6n9x:C, 6n9x:D, 6n9x:E
13 1f0x:A 502 22 0.1235 0.0199 0.4545 6.4 1f0x:B
14 7lba:B 310 28 0.1111 0.0290 0.3214 6.5 7lba:A, 7lba:C, 7lba:D, 7lba:E, 7lba:F, 7lba:G, 7lba:H, 7lba:I, 7lba:J, 7lba:K, 7lba:L, 7lba:M, 7lba:P, 7lba:Q, 7lol:A, 7lox:A, 7lox:B, 7lox:C
15 5lqz:A 506 32 0.1358 0.0217 0.3438 7.1 5lqx:A, 5lqx:B, 5lqx:C, 5lqy:A, 5lqy:B, 5lqy:C, 5lqz:B, 5lqz:C
16 1nui:A 242 27 0.1111 0.0372 0.3333 7.5 1nui:B
17 7elv:E 207 30 0.0988 0.0386 0.2667 8.1 7exo:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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