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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
WGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLNPAITGDGESMITPSAYDTAWVARVPAIDGSARPQFPQTVDWILKNQ
LKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVGDLQVEQGIEFIKSNLELVKDETDQDSLVTDFEIIFPSLLREAQSLR
LGLPYDLPYIHLLQTKRQERLAKLSREEIYAVPSPLLYSLEGIQDIVEWERIMEVQSQDGSFLSSPASTACVFMHTGDAK
CLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALG
FRLLRLHRYNVSPAIFDNFKDAFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNN
KQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWF
RDSGLPLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLP
DYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGV
LIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPA
VKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL

The query sequence (length=780) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3sae:A 780 780 1.0000 1.0000 1.0000 0.0 3sdr:A, 3sdt:A, 3sdu:A, 3sdv:A
2 3p5r:A 750 768 0.4885 0.5080 0.4961 0.0 3p5p:A, 3p5r:B
3 7y47:B 767 761 0.3615 0.3677 0.3706 5.88e-173
4 3pya:A 688 502 0.2795 0.3169 0.4343 6.24e-136 4lix:A, 3pyb:A
5 8ih5:A 689 511 0.2513 0.2845 0.3836 2.26e-119 8ih5:F, 8ih5:B, 8ih5:C, 8ih5:D, 8ih5:E
6 3n0g:B 524 520 0.2115 0.3149 0.3173 1.01e-79 3n0g:A
7 5uv2:A 514 530 0.2244 0.3405 0.3302 2.38e-78 6onm:A, 5uv1:A
8 5uv2:A 514 33 0.0167 0.0253 0.3939 1.0 6onm:A, 5uv1:A
9 3g4f:A 515 520 0.2141 0.3243 0.3212 6.16e-76 3g4f:B
10 1n1z:A 537 518 0.2205 0.3203 0.3320 3.38e-75 1n1b:A, 1n1b:B, 1n1z:B, 1n20:A, 1n20:B, 1n21:A, 1n22:A, 1n22:B, 1n23:A, 1n23:B, 1n24:A, 1n24:B
11 2ong:A 543 532 0.2179 0.3131 0.3195 4.76e-75 2ong:B, 2onh:A, 2onh:B
12 5dhi:A 536 526 0.2064 0.3004 0.3061 6.30e-73 5dhk:A, 4di5:A, 5eas:A, 5eat:A, 5eau:A, 1hx9:A, 1hxa:A, 1hxc:A, 1hxg:A, 5ik0:A, 5ik6:A, 5ik9:A, 5ika:A, 5ikh:A, 5il3:A, 5il8:A, 5ild:A, 5ilh:A, 5ili:A, 5ily:A, 3lz9:A, 3m00:A, 3m01:A, 3m02:A, 4rnq:A
13 7xkw:A 499 516 0.2128 0.3327 0.3217 2.19e-72
14 6a1i:A 522 486 0.1936 0.2893 0.3107 1.64e-63 6a1d:A, 6a1e:A, 6a3x:A, 7e9r:B, 7e9r:C, 6k16:A, 6o9p:A
15 6a2d:A 519 519 0.2051 0.3083 0.3083 3.37e-62 6a2c:A, 6a2c:B, 6a2d:B
16 7bzc:A 535 526 0.1808 0.2636 0.2681 5.75e-50 7bzb:A
17 7mdi:A 734 121 0.0423 0.0450 0.2727 0.063 7mdi:B, 7mdi:D, 7mdi:C
18 8vhu:A 743 103 0.0346 0.0363 0.2621 0.32 5cns:A, 5cns:B, 5cns:C, 5cns:D, 5cnt:A, 5cnt:B, 5cnt:C, 5cnt:D, 5cnu:A, 5cnu:B, 5cnu:C, 5cnu:D, 5cnv:A, 5cnv:B, 5cnv:C, 5cnv:D, 4erm:A, 4erm:B, 4erm:C, 4erm:D, 4erp:A, 4erp:B, 4erp:C, 4erp:D, 1r1r:A, 1r1r:B, 1r1r:C, 2r1r:A, 2r1r:B, 2r1r:C, 3r1r:A, 3r1r:B, 3r1r:C, 4r1r:A, 4r1r:B, 4r1r:C, 5r1r:A, 5r1r:B, 5r1r:C, 6r1r:A, 6r1r:B, 6r1r:C, 7r1r:A, 7r1r:B, 7r1r:C, 3uus:A, 3uus:B, 3uus:C, 3uus:D, 8vhn:A, 8vhn:B, 8vho:A, 8vho:B, 8vhp:A, 8vhp:B, 8vhp:C, 8vhp:D, 8vhp:E, 8vhp:F, 8vhp:G, 8vhp:H, 8vhq:A, 8vhq:B, 8vhq:C, 8vhq:D, 8vhr:A, 8vhr:B, 8vhr:C, 8vhr:D, 8vhu:B, 6w4x:A, 6w4x:B, 2x0x:A, 2x0x:B, 2x0x:C, 2xak:A, 2xak:B, 2xak:C, 2xap:A, 2xap:B, 2xap:C, 2xav:A, 2xav:B, 2xav:C, 2xaw:A, 2xaw:B, 2xaw:C, 2xax:A, 2xax:B, 2xax:C, 2xay:A, 2xay:B, 2xay:C, 2xaz:A, 2xaz:B, 2xaz:C, 2xo4:A, 2xo4:B, 2xo4:C, 2xo5:A, 2xo5:B, 2xo5:C
19 3jb9:g 148 58 0.0256 0.1351 0.3448 0.63
20 3ho8:D 934 93 0.0321 0.0268 0.2688 2.3
21 4v8l:D 2822 60 0.0244 0.0067 0.3167 3.9 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
22 8pn5:E 344 33 0.0154 0.0349 0.3636 8.2 8pn3:A, 8pn3:B, 8pn5:A, 8pn5:B, 8pn5:C, 8pn5:H, 8pn5:F, 8pn5:G, 8pn5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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